Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5 100 2e-16
seq3 95.1 8e-15
seq7 89.7 3e-13
>seq5
Length=3459663
Score = 100 bits (110), Expect = 2e-16
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 1049153 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1049094
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || || |||||||| | || | |||||||||||
Sbjct 1049093 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1049034
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| | ||| | ||| || || | ||| |||||
Sbjct 1049033 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGT 1048978
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || || |||||||| ||
Sbjct 1048977 CTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942
>seq3
Length=5051094
Score = 95.1 bits (104), Expect = 8e-15
Identities = 152/215 (71%), Gaps = 10/215 (5%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831
|||| ||| | ||||| || ||||||||||| ||||| | || | | || |||| ||
Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TACGACCATCCTC 3316466
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || || || || || || |||||||| | || | |||||||||||
Sbjct 3316465 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTG 3316406
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
|||||| || || | ||||||| || | || || || || | ||| || |
Sbjct 3316405 AATCTTGCTCTTCAC----GTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAG 3316350
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|||| ||||| || ||||| || ||||| ||||||
Sbjct 3316349 TTTTACCCGTCAGGGTCTTGACGAAGATTTGCATA 3316315
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830
||||||||| | ||||||||| ||||||||||| ||||| | |||| |||| | || |
Sbjct 3316297 AACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGG-TTCGGCCGTCCT 3316239
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
| || || || || ||||| || || || || ||||| | || | |||||||| ||
Sbjct 3316238 CGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTT 3316179
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| || ||| | |||| || | ||| || || | || || || |
Sbjct 3316178 GGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCT 3316119
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || || || ||||| || ||||| ||||||
Sbjct 3316118 TGCCGGTAAGGGTCTTGACGAAGATTTGCATA 3316087
>seq7
Length=2782040
Score = 89.7 bits (98), Expect = 3e-13
Identities = 131/183 (72%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || ||| |||| |||| || ||||| || || ||||| ||
Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| ||||| ||||| || |
Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 1279394
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || | ||| || |||| ||| ||||| || ||||| || ||||||||
Sbjct 1279393 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1279334
Query 34970 AAA 34972
||
Sbjct 1279333 GAA 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633180613968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |