Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq3 95.1 8e-15 seq7 89.7 3e-13 >seq5 Length=3459663 Score = 100 bits (110), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 1049153 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1049094 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || |||||||| | || | ||||||||||| Sbjct 1049093 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1049034 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| | ||| || || | ||| ||||| Sbjct 1049033 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGT 1048978 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || || |||||||| || Sbjct 1048977 CTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942 >seq3 Length=5051094 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||| ||| | ||||| || ||||||||||| ||||| | || | | || |||| || Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TACGACCATCCTC 3316466 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 3316465 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTG 3316406 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| || || | ||||||| || | || || || || | ||| || | Sbjct 3316405 AATCTTGCTCTTCAC----GTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAG 3316350 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||||| || ||||| || ||||| |||||| Sbjct 3316349 TTTTACCCGTCAGGGTCTTGACGAAGATTTGCATA 3316315 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||| | ||||||||| ||||||||||| ||||| | |||| |||| | || | Sbjct 3316297 AACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGG-TTCGGCCGTCCT 3316239 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || || || || ||||| || || || || ||||| | || | |||||||| || Sbjct 3316238 CGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTT 3316179 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || ||| | |||| || | ||| || || | || || || | Sbjct 3316178 GGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCT 3316119 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || ||||| || ||||| |||||| Sbjct 3316118 TGCCGGTAAGGGTCTTGACGAAGATTTGCATA 3316087 >seq7 Length=2782040 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| |||| |||| || ||||| || || ||||| || Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| ||||| || | Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 1279394 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || | ||| || |||| ||| ||||| || ||||| || |||||||| Sbjct 1279393 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1279334 Query 34970 AAA 34972 || Sbjct 1279333 GAA 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633180613968