Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=5234762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | || |||||| |||| || | || ||||| | ||||||||||| ||||| Sbjct 1830087 GGCTCTCGCTGGAGCTGTGTCTCGAGTGCCTCGACGTGGTTGAGGTAGACGTGCGCGTCG 1830146 Query 29839 CCCAGGGTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| | |||| || || || || | | || || ||||||| ||| | ||| Sbjct 1830147 CCCATGACGTGGGTCAGGCTG-CCGGGCACCAAGTCGCACACATGAGCCAGCATATGCGT 1830205 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 ||| || | |||||| |||||||| ||||| || || ||||||||||| | || | || Sbjct 1830206 GAGCAGCGCGTAGCTTGCGATGTTGAAGGGCACGCCAAGCCCCATGTCGCAGGAGCGTTG 1830265 Query 29958 GTAGAGCTGACA 29969 |||||| || || Sbjct 1830266 GTAGAGTTGGCA 1830277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||| || || |||||||| | ||| ||||| ||||| || || || ||||||||| | || Sbjct 1830512 GTATTCCGCGCCGAAATGGCGCCATTGGAAACCGTAAACGGGGCCTAGGTCTCCCACCTC 1830571 Query 30219 CCTGTGC-TCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 | || || ||||| || |||| ||| || | ||| |||||| ||||||||||| Sbjct 1830572 TCGATGGGTC--AGCCCGAGATTATCCAGAAACTCGCGGGATCCGTTGCCGTCCCAGATC 1830629 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAG 30335 || | || |||| |||| | ||||| ||| ||||| || |||||||| ||| Sbjct 1830630 TTGATGCCTGCCTCGTTGAGCGGTATGGAGGAAGTGTTGCCCTC-GATGAACCACAACAG 1830688 Query 30336 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 ||| | | ||| ||| |||||| | ||| ||||| || || |||| Sbjct 1830689 CTCGGCAATGACAGCCCGTGTAAAGACGCGCTTTGTCGTAAGTAGAGGAA 1830738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617072117138