Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 412 6e-110 seq3 174 3e-38 >seq6 Length=3061052 Score = 412 bits (456), Expect = 6e-110 Identities = 1222/1860 (66%), Gaps = 86/1860 (5%) Strand=Plus/Minus Query 212574 GCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCC---CTTGCCCCAGCC- 212629 ||||| |||| || || || ||||||||||||||||| || || ||| |||||| Sbjct 2277458 GCAGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTT---CCAGCCA 2277402 Query 212630 GTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCA 212688 ||| | |||||| |||| ||| |||| | | || || ||||| || Sbjct 2277401 GTGAA-GTGCAT-GCTGGTGA---TCTTACCCATGGTA----GG--ATCCTT------CA 2277359 Query 212689 GATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTA 212748 || | ||| ||||| ||| ||||| ||||| | | | ||||| ||||| | | Sbjct 2277358 TGTGAATGTTGAGGGATTGAGATTGGTCAATGAAAGCACCACGATCAGCAGCCATCTGCA 2277299 Query 212749 TGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 | | | ||| |||| |||||| ||||||||| ||| |||| || | |||| Sbjct 2277298 CAACTTGACGCTGCGAGATCTCCCAGACGGTCTTGTAGAGACTCTTGATATCAGCAGGGA 2277239 Query 212809 AGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC--TGCAGGCG------CAT 212860 ||| |||||||| | ||| || || ||||| || | ||| ||| Sbjct 2277238 TATTGGGAATGTTCTGAATAGAGCC-------ATTCTCAGCAATG-ATGCGATTCTTCAT 2277187 Query 212861 GTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTG 212920 | | || |||||| ||| || |||| ||||| || |||||||| | ||| Sbjct 2277186 GGCATCCGACCAGAGACCCATGTCGACCAGATCCTTGAGCAACCACGGGTTGACGACCTG 2277127 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| ||||| | | || | |||||||||| ||| |||||||| || || | || || Sbjct 2277126 GAACTCACCAGCCAAGACACGTCTCTGGTAAATGTTGGAAGTGTAAGGTTCAAAGCATTC 2277067 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 ||||| || ||||| || | || |||||||||||||||||||| ||||| | ||||| Sbjct 2277066 ATTGTTGCCGAGAATTTGCGAGGTACTGGCTGTGGGCATGGGAGCTACCAGCAAGCTGTT 2277007 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | | |||||||| || | ||||| || |||| |||| |||| Sbjct 2277006 GCGGATACCGTGCTCCTTGACCTGCTCACGAAGGTCCTCCCACTCCC---------ACAG 2276956 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 ||| |||||||||||||||||||||||||| |||||| | | | || || Sbjct 2276955 ATCCGATGGCTTCACGTTCCACATGTCAAACTGCAGGATGCCCTCGGAAGCAGGAGATCC 2276896 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || | | || ||| ||||| ||||| ||||| ||||| || ||| || ||| || Sbjct 2276895 CTTGAATGACTCGTAAGGGCCCTGCTCTTTGGCGAGCTCAACCGAAGCCGTCAAGGCGGC 2276836 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 || ||| ||||||||||| |||| | |||| | || ||||| || ||| |||||| Sbjct 2276835 GTGGTAAATGGTTTCAAAGATCTGCTTGTTCAACTCACGAGCCTCGGGTGACTCGAAGGG 2276776 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 | ||| | ||| ||||||| || || || || || | ||| ||||||| ||| Sbjct 2276775 GAGTCTCAGGGCCAAGAAAGCATCAGCGAGACCTTGAACACCCACGCCAATGGGTCGGTG 2276716 Query 213341 TCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || ||| || | ||||| | |||||| |||| ||| ||||| ||||| Sbjct 2276715 ACGCATGTTGCTGTTTCGGGCCTCCTGGACGGGGTAGTGGTTGACGTCAATGATTTTGTT 2276656 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCC 213460 ||| |||||| | | || | ||||| | ||| | || | || | | | |||| Sbjct 2276655 GAGATTGCGGACGACGACCTGAGTGACCTCATGCAGCTTCTGGAAATCGTA---GCAGCC 2276599 Query 213461 CCC---GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | || | || || ||||| || | ||||||||||||||||||||||| Sbjct 2276598 CTCGTTGTAGTCAACGAAGGATGGCAGAGCCAGAGAAGCCAGGTTGCAAACGGCCACCTC 2276539 Query 213518 CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAG 213577 | || | | |||||| |||||||||||||| |||||| | |||||| || || || Sbjct 2276538 GTCAGGGGCGCAGTACTCGATGATCTCGGTGCAGAGGTTGGAACTTCGGATTGTTCCGAG 2276479 Query 213578 GTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 ||||| ||| ||| ||||| | |||| |||||||||||||||| ||||| |||| Sbjct 2276478 GTTCTTCTGG-TTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGG 2276420 Query 213637 TCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGA 213696 |||| ||||| | | || || | ||| || | | |||||||| | || Sbjct 2276419 TCTCAGTCTGGGCCTCGAGAATAGAGTACCACAGCTTCTGGGCCTTGA----TGGTCTTG 2276364 Query 213697 CAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACC 213755 | || || | | || |||||||| || || | | | || || | ||| || Sbjct 2276363 CGGCCGCGACCCTCGCTCTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAG 2276304 Query 213756 CTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGAC 213814 | |||| || || || ||| ||||| ||| ||||||| ||| || |||| ||| Sbjct 2276303 TCGGCCAGACCTGGGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTC-GAC 2276245 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || ||||||||| || |||| ||| || || ||| || || | | | || Sbjct 2276244 ACGCTTCATGAACAGATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTC 2276185 Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| || ||| || |||| || || || || || | ||| || ||||| ||||| Sbjct 2276184 CTCCTTGCCGTGGTTCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTC 2276125 Query 213935 CATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | ||||||||||||||||| | || | ||||| |||||||| || || ||| Sbjct 2276124 AAGATAGATGGCAAAGGCGCCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGT 2276065 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 ||||||||| || || | ||| ||||| |||||||| ||||||||| || || || Sbjct 2276064 GTTGTTGAAGACCCGAAGCATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAAT 2276005 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACT 214107 || || || | || | || ||| |||| ||| || || || || || | Sbjct 2276004 GTAGGAACCAGTAGCAC---GGATGC-GGTGGACGTTGAGGCCGATACCGCCAGCCATTT 2275949 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGA 214167 ||||||||||||||||| | | | || || ||| || | ||||||||||| | | Sbjct 2275948 TGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCA 2275889 Query 214168 GGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG--CCAGAGTTGAAAAGCGT 214225 || | || |||||| || ||||||| | || ||| || | ||||| || || Sbjct 2275888 TGTCGACCAGGAAGCAAGAGGACAGCTGGGAC--TGAGGAGTACCGGCATTGAAGAGTGT 2275831 Query 214226 GGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGG 214285 |||| || ||| | | |||||| | || | ||| | || ||||| | ||| Sbjct 2275830 GGGGGAAGCGTGGGTGAAGAACTTGCTCGACATGAGGTTATACGTCTCAATGACGCGCTC 2275771 Query 214286 GATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTAT 214345 |||| || ||| | ||| | ||| | ||||||||| || | ||| | Sbjct 2275770 AATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGACGCTCGA- 2275712 Query 214346 GGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 | || ||| | | |||||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 2275711 CGATC--TTGCCGTCAAGCTTGAGGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTA 2275654 >seq3 Length=5051094 Score = 174 bits (192), Expect = 3e-38 Identities = 344/503 (68%), Gaps = 7/503 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 937642 CTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTC 937583 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| || || | | | ||| ||||| | |||| Sbjct 937582 CATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCT-TCTCATTGCCCAGAGCAACGAGCA 937524 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||||||||||| |||| ||||| | ||| ||||| ||||||||| | || | Sbjct 937523 AGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGAAGAG 937464 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||| |||| || | || |||| ||| || ||||| || | ||||| Sbjct 937463 CGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATAATCT 937404 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCG-CAGGTGCTTGGCATAGAGCATGCAGGCA 48136 || || ||| || || || | ||| |||||| | |||||| |||||| Sbjct 937403 CCTGAATGCGCTGCT-TGCTGGGGCGATGCTTCAGGTGAGAGA---AGAGCAGGCAGGCG 937348 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||| | ||| ||||| || ||||||| ||||||||||| ||||| ||| Sbjct 937347 AAGTCGGTGTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 937288 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || ||||||||||| |||| ||||| | ||| ||| ||||| ||| Sbjct 937287 ATCAGGCCACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCC 937228 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || ||||| || || | || ||||||| | || ||| || |||||| Sbjct 937227 TCGACAGCGGCGAAGGCAACCAGGCGCTGAGCGAAAGAGGAGTCCTTATCCTGGATCCAT 937168 Query 48317 GAAAGCGCCCAGTCTGCCTTCTT 48339 | ||||| || |||||||| Sbjct 937167 CGGATGGCCCAATCGGCCTTCTT 937145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531565719040