Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 300 3e-76 seq3 134 3e-26 >seq6 Length=3061052 Score = 300 bits (332), Expect = 3e-76 Identities = 850/1280 (66%), Gaps = 47/1280 (4%) Strand=Plus/Minus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 ||||| ||| |||||||| ||||| ||||||||| |||||| | ||| | ||||||| Sbjct 2276847 CGTCAAGGCGGCGTGGTAAATGGTTTCAAAGATCTGCTTGTTCAA-CTCACGAGCCTCGG 2276789 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 | || |||||| | | ||| | ||||| | || || || || || || || | Sbjct 2276788 GTGACTCGAAGGGGAGTCTCAGGGCCAAGAAAG-CATCAGCGAGACCTTGAACACCCACG 2276730 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | ||||| | ||| | || |||| ||||| || ||||| Sbjct 2276729 CCAATGGGTCGGTGACGCATGTTGCTGTTTCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 2276672 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 |||| || | |||||||| || | || ||| | | ||||| |||||||||| Sbjct 2276671 CGTCAATGATTTTGTTGAGATTGCGGACGACGACCTGAGTGACCTCATGCAGCTTCTGGA 2276612 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 || | | || ||| |||| | | || || || | || || | Sbjct 2276611 AATCGTA---------GCAGCCCTCGTTGTAG---TCAACGAAGGATGGCAGAGCCAGAG 2276564 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 |||||||| || |||||||||||||| | | |||| |||||||| || |||| Sbjct 2276563 AAGCCAGGTTGCAAACGGCCACCTCGTCAGGGGCGCAGTACTCGATGATCTCGGTGCAGA 2276504 Query 221772 GGTTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-T 221828 ||||| | |||| ||| || || |||| || || || |||||| ||| ||| | | Sbjct 2276503 GGTTG--GAACTTCGGATTGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGAT 2276447 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||||||||| ||||| || ||||| ||| ||| | ||||| || ||| | Sbjct 2276446 CCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGCCTCGAGAATAGAGTACCACA 2276387 Query 221889 GTTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAG 221947 | | ||||| || | || | | || ||||||| ||| | | | | || | Sbjct 2276386 GCT-TCTGGGCCTTGATGGTCTTGCGGCCGCGACCCTCGCTCTCGTACTTCTCA-TACAA 2276329 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | |||||| || ||||| ||| |||| ||||| ||| ||| |||||| Sbjct 2276328 GGCCT--CAAACTCCTCGCCGTAGCAGTCGGCCAGACCTGGGCACTCATTGGGGCACATC 2276271 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||||| ||| | | ||| | || |||||| || || |||||||| || ||| Sbjct 2276270 AGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGATCCAGAGGGCC 2276211 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 || ||||| | | || |||||| ||||| ||| || | || || | ||| Sbjct 2276210 AAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTACGCAAGTCGAGGAAC 2276151 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | ||| || ||||| ||||| ||||||| ||| | ||||| || ||||||||| Sbjct 2276150 TCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCGCCAGGACGCTTGTTG 2276091 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||||||| || || || || |||||||| ||||| | || ||||| ||| Sbjct 2276090 CCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGCATGGGGACCAGACCG 2276031 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 |||||| |||||||| || |||||| | ||| || | || | | || ||| Sbjct 2276030 TTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCAC---GGATGC-GGTGGAC 2275975 Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 | ||||||||| || || ||| ||||||||||||||| ||||||| ||||| Sbjct 2275974 GTTGAGGCCGATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATA 2275915 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||| || || || ||| ||||| | || | ||| || ||||| |||| ||| || | Sbjct 2275914 GATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCTGGGACTG 2275855 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | | || ||| || || || ||||| ||||| || ||| | || ||||| || Sbjct 2275854 AGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTTGCTCGACATGAG 2275795 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCA 222542 | |||||||| | ||| | | |||||||| ||| || | | | || | || Sbjct 2275794 GTTATACGTCTCAATGACGCGCTCAATGTTGTCTCCCCAGATGCCG-ACAGCAACACGCA 2275736 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATT 222599 || ||||| ||| || | ||| || | | || | |||| ||| |||||||| Sbjct 2275735 TGATCATGTGCTGAGGACGCTCGAC-GATCTTGCCGTCAAGCT--TGAGGAGGTACGAGC 2275679 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 ||||| ||||||||| || ||||| | || ||||| | | ||| || | ||||| Sbjct 2275678 GTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGTCACGGTCGTAGACGATGGCGG 2275619 Query 222660 CGTCCAGCTCCGACTTGTGC 222679 ||||| ||| ||||||| Sbjct 2275618 AGTCCAATTCCTCCTTGTGC 2275599 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 221072 TCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAA 221131 |||| ||| |||||| | || |||| |||||| || | ||| || || ||||| Sbjct 2277182 TCCGACCAGAGACCCATGTCGACCAGATCCTTGAGCAACCACGGGTTGACGACCTGGAAC 2277123 Query 221132 TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTG 221191 || || | | || | |||||||| | ||| |||||| | ||||| | || || ||| Sbjct 2277122 TCACCAGCCAAGACACGTCTCTGGTAAATGTTGGAAGTGTAAGGTTCAAAGCATTCATTG 2277063 Query 221192 TTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 ||||| || || || | || ||||| ||||||||||| || ||||||| |||||||| Sbjct 2277062 TTGCCGAGAATTTGCGAGGTACTGGCTGTGGGCATGGGAGCTACCAGCAAGCTGTTGCG 2277004 >seq3 Length=5051094 Score = 134 bits (148), Expect = 3e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| ||||| ||||| || ||||| ||||| |||||||||||||| | || || | | Sbjct 937200 AGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCAGCGGCGCATTCGCCTCAA 937259 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || |||||||| ||| ||| ||||||||||||||| Sbjct 937260 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 937319 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | |||||||| ||||||| || || ||||||||||||| Sbjct 937320 CTCGTGACGAGGGCCTCCACACCGACTTCGCCTGCCTGCTCT 937361 Score = 104 bits (114), Expect = 4e-17 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||||||| ||||| ||||| Sbjct 936735 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTC 936794 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| | ||| |||| || ||| | | || ||| || | || || Sbjct 936795 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAACGATGATGAGAAGTACTTCGTCTCT 936854 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||| ||||| || ||||| ||||| || || || ||||| ||| |||| || Sbjct 936855 CACATCCTGGCTTTCTTCGCTGCCTCGGATGGCATTGTCAATGAGAACCTGGTCGAGCGA 936914 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| | |||||| || |||||||| |||||||| Sbjct 936915 TTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGAT 936967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843569280640