Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 seq3 96.9 1e-14 seq4 91.5 4e-13 seq6 86.0 2e-11 >seq1 Length=6530789 Score = 109 bits (120), Expect = 2e-18 Identities = 190/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | ||| || || || ||||| || | || || || || Sbjct 5177461 TCTTCGAGAGCCTTGACGAGACGTCGTTGGATGTAACCGGTCTCTGCCGTCTTGACGGCG 5177402 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| | | |||| |||| || |||||||| | || ||| || Sbjct 5177401 GTATCAATCAGACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCCGAGGGTGTGAGA 5177342 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||| |||| ||||||||||| |||||||| || | ||| |||||| Sbjct 5177341 CCACGCAGGTACGAGTTCTCGACGAAACCACGGGCCTCGGGGGAGTAATCGTCCTTGGTG 5177282 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| |||||||| || | ||| | || |||||||| || || ||| ||||| Sbjct 5177281 AAATGGGGCAAGGTCCTGTACTTGAAACCGAACGGAATACGCTTGCCCTCCACGATCTGC 5177222 Query 302812 TGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 || | | ||| || |||||||||| || || Sbjct 5177221 TGACCGACAAGGGCCG---TCATCTGCGAGATGTT 5177190 >seq3 Length=5051094 Score = 96.9 bits (106), Expect = 1e-14 Identities = 328/509 (64%), Gaps = 4/509 (1%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 ||||| ||| ||||| | || ||||| || |||||||||||| ||| | | Sbjct 937133 CCTTGCATTCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCT 937192 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 || ||| || || ||||| || || | || ||||| || |||||||| || || ||| Sbjct 937193 TTCGCTCAGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCAGCGGCGCATTC 937252 Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 ||| || || ||||| || |||||||| | | || || ||| || || ||||| Sbjct 937253 GCCTCAATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAG 937312 Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTA 133678 || || || | ||||||| || |||||||| || ||| | || |||| | | Sbjct 937313 CTCATCTCTCGTGACGAGGGCCTCCACACCGACTTCGCCTGCCTGCTCTTCTCTCACCTG 937372 Query 133679 GAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAG 133738 ||| | | || ||| | ||| | || ||||| | || || || ||| ||| Sbjct 937373 AAGCATCGCCCCAGCAAGCAGCGCATTCAGGAGATTATCACCGATGCCGTCACAATCGAG 937432 Query 133739 GTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATG 133798 ||||| | | | || |||| ||| | | | || ||||| | |||||| Sbjct 937433 CAGGAATTCTTGACTGAGGCATTGCCCTGCGCTCTTCTCGGCATGAACTCTACCCTGATG 937492 Query 133799 CAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAGATT 133858 ||| || ||||| || || || || | ||| |||| | || || ||||| Sbjct 937493 AAGCAGTACATTGAGTTCGTCGCGGATCGCTTGCTCGTTGCTCTGGGCAATGAGAAGATC 937552 Query 133859 TAC--GGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTA 133916 ||| ||| | |||| || ||||||| ||||||| ||| | | | ||||| | Sbjct 937553 TACAAGGT--CTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCA 937610 Query 133917 ATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 | ||||||||| | ||||||| || ||| Sbjct 937611 ACTTCTTCGAGAAGCGGGTAGCTGATTAC 937639 >seq4 Length=4428529 Score = 91.5 bits (100), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| ||||| ||||||||||||||||| || ||||||||||| | | Sbjct 1274725 GCACCGTGAGCAATCATGCAATCGCGCTCCATTTCACCGAATCGTAGACCACCATCCCTA 1274666 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||| ||| ||||||| Sbjct 1274665 GCACGACCTTCGACAGGCTG 1274646 >seq6 Length=3061052 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| || |||| |||||| || ||||| || || | |||| |||||| | | Sbjct 1825148 GCACCGTAGGCGATCAGACAATCGCGCTCCATCTCTCCCAGTCGCAAACCACCTTGCCTC 1825207 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 |||||||||| | || || || || | || | || || || ||| |||| | | Sbjct 1825208 GACCTACCCTCGGTTGGCTGCCGGGTAAGAATGGCTCGAGGGCCGCGAGAACGAGAGTGC 1825267 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTC 233422 || ||||||| ||||||||||||||||||| Sbjct 1825268 ATCTTATCTTGAACCATATGCTTCAGTCTC 1825297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815601087722