Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 2e-18
seq3 96.9 1e-14
seq4 91.5 4e-13
seq6 86.0 2e-11
>seq1
Length=6530789
Score = 109 bits (120), Expect = 2e-18
Identities = 190/275 (69%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| | ||| || || || ||||| || | || || || ||
Sbjct 5177461 TCTTCGAGAGCCTTGACGAGACGTCGTTGGATGTAACCGGTCTCTGCCGTCTTGACGGCG 5177402
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| | | |||| |||| || |||||||| | || ||| ||
Sbjct 5177401 GTATCAATCAGACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCCGAGGGTGTGAGA 5177342
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | ||| |||| ||||||||||| |||||||| || | ||| ||||||
Sbjct 5177341 CCACGCAGGTACGAGTTCTCGACGAAACCACGGGCCTCGGGGGAGTAATCGTCCTTGGTG 5177282
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || |||| |||||||| || | ||| | || |||||||| || || ||| |||||
Sbjct 5177281 AAATGGGGCAAGGTCCTGTACTTGAAACCGAACGGAATACGCTTGCCCTCCACGATCTGC 5177222
Query 302812 TGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843
|| | | ||| || |||||||||| || ||
Sbjct 5177221 TGACCGACAAGGGCCG---TCATCTGCGAGATGTT 5177190
>seq3
Length=5051094
Score = 96.9 bits (106), Expect = 1e-14
Identities = 328/509 (64%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498
||||| ||| ||||| | || ||||| || |||||||||||| ||| | |
Sbjct 937133 CCTTGCATTCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCT 937192
Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558
|| ||| || || ||||| || || | || ||||| || |||||||| || || |||
Sbjct 937193 TTCGCTCAGCGCCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTTTTCAGCGGCGCATTC 937252
Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618
||| || || ||||| || |||||||| | | || || ||| || || |||||
Sbjct 937253 GCCTCAATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAACGAG 937312
Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTA 133678
|| || || | ||||||| || |||||||| || ||| | || |||| | |
Sbjct 937313 CTCATCTCTCGTGACGAGGGCCTCCACACCGACTTCGCCTGCCTGCTCTTCTCTCACCTG 937372
Query 133679 GAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAG 133738
||| | | || ||| | ||| | || ||||| | || || || ||| |||
Sbjct 937373 AAGCATCGCCCCAGCAAGCAGCGCATTCAGGAGATTATCACCGATGCCGTCACAATCGAG 937432
Query 133739 GTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATG 133798
||||| | | | || |||| ||| | | | || ||||| | ||||||
Sbjct 937433 CAGGAATTCTTGACTGAGGCATTGCCCTGCGCTCTTCTCGGCATGAACTCTACCCTGATG 937492
Query 133799 CAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAGATT 133858
||| || ||||| || || || || | ||| |||| | || || |||||
Sbjct 937493 AAGCAGTACATTGAGTTCGTCGCGGATCGCTTGCTCGTTGCTCTGGGCAATGAGAAGATC 937552
Query 133859 TAC--GGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTA 133916
||| ||| | |||| || ||||||| ||||||| ||| | | | ||||| |
Sbjct 937553 TACAAGGT--CTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCA 937610
Query 133917 ATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
| ||||||||| | ||||||| || |||
Sbjct 937611 ACTTCTTCGAGAAGCGGGTAGCTGATTAC 937639
>seq4
Length=4428529
Score = 91.5 bits (100), Expect = 4e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||| ||||| ||||||||||||||||| || ||||||||||| | |
Sbjct 1274725 GCACCGTGAGCAATCATGCAATCGCGCTCCATTTCACCGAATCGTAGACCACCATCCCTA 1274666
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | ||| ||| |||||||
Sbjct 1274665 GCACGACCTTCGACAGGCTG 1274646
>seq6
Length=3061052
Score = 86.0 bits (94), Expect = 2e-11
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
||||||| || |||| |||||| || ||||| || || | |||| |||||| | |
Sbjct 1825148 GCACCGTAGGCGATCAGACAATCGCGCTCCATCTCTCCCAGTCGCAAACCACCTTGCCTC 1825207
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392
|||||||||| | || || || || | || | || || || ||| |||| | |
Sbjct 1825208 GACCTACCCTCGGTTGGCTGCCGGGTAAGAATGGCTCGAGGGCCGCGAGAACGAGAGTGC 1825267
Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTC 233422
|| ||||||| |||||||||||||||||||
Sbjct 1825268 ATCTTATCTTGAACCATATGCTTCAGTCTC 1825297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471815601087722
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