Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 111 2e-18
seq1 109 7e-18
seq3 95.1 1e-13
seq2 87.8 2e-11
>seq6
Length=3061052
Score = 111 bits (122), Expect = 2e-18
Identities = 108/138 (78%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 19048 ACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGC 19107
|||||| ||||||||| || || |||||| ||| || |||| | ||||| |||||||
Sbjct 1044742 ACAGCACCGGCGGCACCGTCACCTGCGTGATCCGCGGCGCGCCGTCCGGCCTGGGCGAGC 1044801
Query 19108 CGTGCTTTGACAAGATCG-AGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
| || |||||| | | ||||| | |||||||||||||||||||| ||||| ||| |
Sbjct 1044802 CCGCATTCGACAAGCTGGCAGGCCACTCTCGCCCACGCCATGCTGTCCATCCCCGCCGTC 1044861
Query 19167 AAGGGATTCGAGATTGGC 19184
||||| |||||| | |||
Sbjct 1044862 AAGGGCTTCGAGGTCGGC 1044879
Score = 87.8 bits (96), Expect = 2e-11
Identities = 262/400 (66%), Gaps = 17/400 (4%)
Strand=Plus/Plus
Query 18099 TGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCC 18158
||||||||| ||||| |||| ||||||||||||| | || || || | |
Sbjct 1044128 TGGCGAGTCCCACGGCAAATCCGTCTCCTGCATCATCGACAACTGTCCTCCCGGCCTCGC 1044187
Query 18159 ACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACT 18218
|| |||| | || |||||||| | || || || || || |||||| | | |
Sbjct 1044188 CCTCACCGAAGAGGATATCCAGCCCTAAATGACCCGTCGTCGCCCCGGCCAGTCCTCCAT 1044247
Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278
|||| || ||||||||| || |||| |||||| || ||||||||||| ||| |
Sbjct 1044248 CACCACTCCTCGCAACGAGAAGGACAAGGTCACCATCCACTCCGGCACGGAGAATGGCTT 1044307
Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTT---TGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|||||| | ||| | |||||| || ||||| |||||||| ||| ||
Sbjct 1044308 --TCCTCGGCACTCCCAT---CCTCTTGACCGTCCCCAACGAGGACCAGCGACCCAAGGA 1044362
Query 18336 CTATTCCGACATG-----TGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATG 18390
||| ||| | | || || || | ||| |||||||||| |||||| |
Sbjct 1044363 CTACGGCGAGAAGACCATTGATCTGTACCCCACCCCAGTCACGCCGACTGGACCTACCTC 1044422
Query 18391 GCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTC 18450
| ||||| || ||||||||| || || | || || |||||||||||| |
Sbjct 1044423 GAGAAGTATGGTATCAAGGCGAGCTCCGGACGCAGCAGGAGTAGTGCCCGCGAGACAAT- 1044481
Query 18451 ATGC--GCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488
||| | || || || || || ||||||||||| |||||
Sbjct 1044482 -TGCAAGAGTAGCGGCTGGGGCCGTCGCCGAGAAGTGGCT 1044520
>seq1
Length=6530789
Score = 109 bits (120), Expect = 7e-18
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
|||||| | ||||||||||| || || || |||| |||||| | |||||||||||||||
Sbjct 2636414 AACTACTTGGACATCAAGCCCCTCCTAGACGTTGGCTGCAAGACGGTGGCCAACATGATC 2636473
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||| || || ||||| || ||||| || |||||||
Sbjct 2636474 AAGGGCAAGTCTCCTGAAGAGATTCGGAAGACTTTCAACATCA 2636516
>seq3
Length=5051094
Score = 95.1 bits (104), Expect = 1e-13
Identities = 171/249 (69%), Gaps = 1/249 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| |||||||||||||| | || |||||
Sbjct 937647 GCCTTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 937588
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| ||||||| ||| || || || | ||
Sbjct 937587 TTCTCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACG 937528
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||| ||| || ||||| ||||| |||||||| ||| ||| | |||||||||||
Sbjct 937527 AGCAAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGA 937468
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || |||| | ||| ||| || || | |||||| |||||| ||| |||
Sbjct 937467 AGAGCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATA 937408
Query 868931 ATCTGCCTG 868939
|||| ||||
Sbjct 937407 ATCT-CCTG 937400
Score = 91.5 bits (100), Expect = 2e-12
Identities = 136/191 (71%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| ||| ||| | |||||| |||| || |||||||| ||||| ||||||
Sbjct 937332 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTC 937273
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||| | | ||| ||| ||||||||| |||||||| ||||| |||
Sbjct 937272 TTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTCGACAGCGGCGAAG 937213
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359
| | || |||| || || | | || | ||| | | |||||| || |||||
Sbjct 937212 GCAACCAGGCGCTGAGCGAAAGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCAA 937156
Query 869360 TCGGCCTTTTT 869370
|||||||| ||
Sbjct 937155 TCGGCCTTCTT 937145
>seq2
Length=5234762
Score = 87.8 bits (96), Expect = 2e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
|| || ||||| |||||||||| || ||| | | ||||| || |||||||| || ||
Sbjct 3558358 CCACGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTATCAAGGCCTCCTCT 3558417
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| |||||| ||||||||||| | || || ||||||||||| || |||
Sbjct 3558418 GGCGGCGGCCGGAGCAGCGCCCGCGAGACTATTGCCCGTGTTGCCGCCGGCGCTGTTGCC 3558477
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 3558478 GAGAAGTGGCT 3558488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107130501143602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |