Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-18 seq1 109 7e-18 seq3 95.1 1e-13 seq2 87.8 2e-11 >seq6 Length=3061052 Score = 111 bits (122), Expect = 2e-18 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 19048 ACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGC 19107 |||||| ||||||||| || || |||||| ||| || |||| | ||||| ||||||| Sbjct 1044742 ACAGCACCGGCGGCACCGTCACCTGCGTGATCCGCGGCGCGCCGTCCGGCCTGGGCGAGC 1044801 Query 19108 CGTGCTTTGACAAGATCG-AGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 | || |||||| | | ||||| | |||||||||||||||||||| ||||| ||| | Sbjct 1044802 CCGCATTCGACAAGCTGGCAGGCCACTCTCGCCCACGCCATGCTGTCCATCCCCGCCGTC 1044861 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| |||||| | ||| Sbjct 1044862 AAGGGCTTCGAGGTCGGC 1044879 Score = 87.8 bits (96), Expect = 2e-11 Identities = 262/400 (66%), Gaps = 17/400 (4%) Strand=Plus/Plus Query 18099 TGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCC 18158 ||||||||| ||||| |||| ||||||||||||| | || || || | | Sbjct 1044128 TGGCGAGTCCCACGGCAAATCCGTCTCCTGCATCATCGACAACTGTCCTCCCGGCCTCGC 1044187 Query 18159 ACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACT 18218 || |||| | || |||||||| | || || || || || |||||| | | | Sbjct 1044188 CCTCACCGAAGAGGATATCCAGCCCTAAATGACCCGTCGTCGCCCCGGCCAGTCCTCCAT 1044247 Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278 |||| || ||||||||| || |||| |||||| || ||||||||||| ||| | Sbjct 1044248 CACCACTCCTCGCAACGAGAAGGACAAGGTCACCATCCACTCCGGCACGGAGAATGGCTT 1044307 Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTT---TGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 |||||| | ||| | |||||| || ||||| |||||||| ||| || Sbjct 1044308 --TCCTCGGCACTCCCAT---CCTCTTGACCGTCCCCAACGAGGACCAGCGACCCAAGGA 1044362 Query 18336 CTATTCCGACATG-----TGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATG 18390 ||| ||| | | || || || | ||| |||||||||| |||||| | Sbjct 1044363 CTACGGCGAGAAGACCATTGATCTGTACCCCACCCCAGTCACGCCGACTGGACCTACCTC 1044422 Query 18391 GCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTC 18450 | ||||| || ||||||||| || || | || || |||||||||||| | Sbjct 1044423 GAGAAGTATGGTATCAAGGCGAGCTCCGGACGCAGCAGGAGTAGTGCCCGCGAGACAAT- 1044481 Query 18451 ATGC--GCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488 ||| | || || || || || ||||||||||| ||||| Sbjct 1044482 -TGCAAGAGTAGCGGCTGGGGCCGTCGCCGAGAAGTGGCT 1044520 >seq1 Length=6530789 Score = 109 bits (120), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 |||||| | ||||||||||| || || || |||| |||||| | ||||||||||||||| Sbjct 2636414 AACTACTTGGACATCAAGCCCCTCCTAGACGTTGGCTGCAAGACGGTGGCCAACATGATC 2636473 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| || || ||||| || ||||| || ||||||| Sbjct 2636474 AAGGGCAAGTCTCCTGAAGAGATTCGGAAGACTTTCAACATCA 2636516 >seq3 Length=5051094 Score = 95.1 bits (104), Expect = 1e-13 Identities = 171/249 (69%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 937647 GCCTTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 937588 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| ||||||| ||| || || || | || Sbjct 937587 TTCTCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGCCCAGAGCAACG 937528 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| ||| || ||||| ||||| |||||||| ||| ||| | ||||||||||| Sbjct 937527 AGCAAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGTTCATGCCGAGA 937468 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||| | ||| ||| || || | |||||| |||||| ||| ||| Sbjct 937467 AGAGCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGGCATCGGTGATA 937408 Query 868931 ATCTGCCTG 868939 |||| |||| Sbjct 937407 ATCT-CCTG 937400 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| || |||||||| ||||| |||||| Sbjct 937332 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTC 937273 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | | ||| ||| ||||||||| |||||||| ||||| ||| Sbjct 937272 TTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTCGACAGCGGCGAAG 937213 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || |||| || || | | || | ||| | | |||||| || ||||| Sbjct 937212 GCAACCAGGCGCTGAGCGAAAGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCAA 937156 Query 869360 TCGGCCTTTTT 869370 |||||||| || Sbjct 937155 TCGGCCTTCTT 937145 >seq2 Length=5234762 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || ||||| |||||||||| || ||| | | ||||| || |||||||| || || Sbjct 3558358 CCACGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTATCAAGGCCTCCTCT 3558417 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| ||||||||||| | || || ||||||||||| || ||| Sbjct 3558418 GGCGGCGGCCGGAGCAGCGCCCGCGAGACTATTGCCCGTGTTGCCGCCGGCGCTGTTGCC 3558477 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 3558478 GAGAAGTGGCT 3558488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130501143602