Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-21 seq5 114 2e-19 seq3 111 2e-18 seq1 105 1e-16 >seq6 Length=3061052 Score = 122 bits (134), Expect = 1e-21 Identities = 328/502 (65%), Gaps = 15/502 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| | ||||||| ||| ||||| || |||||||| || || |||||||| Sbjct 2276085 CTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGCATGGGGACCAGACCGTTGGA 2276026 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| || | || || | ||| || | ||| Sbjct 2276025 TGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCACGGATGCGGTGGACGTTGAGGCC 2275966 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| ||| |||||||| | ||||| | || || || || ||||| || || Sbjct 2275965 GATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCATC 2275906 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | ||| ||||| || || || | | | || || Sbjct 2275905 AATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCTGGGACTGAGGAGTACC 2275846 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||||||| ||||| | || ||| | ||| |||||| | || || Sbjct 2275845 GGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTTGCTCGACATGAGGTTATACGT 2275786 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | |||||| | | | || ||| || || ||||| || || Sbjct 2275785 CTCAATGACGCGCTCAA-----TGTT----GTC------TCCCCAGATGCCGACAGCAAC 2275741 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||||| ||| || |||||||||| | || | |||| ||||| || Sbjct 2275740 ACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGTCAAGCTTGAGGAGGTACGA 2275681 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || || ||| | ||| |||||| ||| | ||| || |||| | |||||| Sbjct 2275680 GCGTTCCAAAGTCTTGAAGCCGAAGTACTGATAGTTGAAGTCACGGTCGTAGACGATGGC 2275621 Query 2074020 GGCGTCGAGGGCCTCCTTGTGC 2074041 || ||| | ||||||||||| Sbjct 2275620 GGAGTCCAATTCCTCCTTGTGC 2275599 Score = 104 bits (114), Expect = 4e-16 Identities = 290/445 (65%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||||||||| ||||||| || ||| | || || ||||||| |||||| Sbjct 2276524 ACTCGATGATCTCGGTGCAGAGGTTGGA--ACTTCGGATTGTTCCGAGGTTCTTCTGGTT 2276467 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| | ||||||| |||||| |||| ||| ||||| |||| || Sbjct 2276466 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGC 2276407 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGA-GGTCCT-CG--CGCGGCCCT 2071747 | || || | |||| | || |||| || |||| | || |||| |||| Sbjct 2276406 CTCGAGAATAGAGTACCACA----GCTTCTGGGCCTTGATGGTCTTGCGGCCGCGACCCT 2276351 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGG 2071807 | | ||| ||||| | |||||| ||| ||| ||| || | Sbjct 2276350 CGCTCTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGACCTG 2276291 Query 2071808 GCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACA 2071867 | ||| ||||| | || | |||||||||| || | || || ||| |||| Sbjct 2276290 GGCACTCATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACA 2276231 Query 2071868 GGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGT 2071927 | || |||| ||| | | || ||||| || || || |||||||||||||||| Sbjct 2276230 GATCTGGGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGT 2276171 Query 2071928 TCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAA 2071987 |||| || |||||| | |||| | |||||| ||||| ||||| || ||| ||||| Sbjct 2276170 TCTTACGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAA 2276111 Query 2071988 AGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||| |||||| ||| || Sbjct 2276110 AGGCGCCAGGACGCTTGTTGCCACC 2276086 >seq5 Length=3459663 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| ||| | | Sbjct 2098042 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAGTTCACCGGGGAG 2098101 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 || ||||| |||| ||||||||||||||||| | ||| ||| Sbjct 2098102 AATGAGGCGAACGGAGGTCTGGATCTCGCGGGAGGAGATGGTG 2098144 >seq3 Length=5051094 Score = 111 bits (122), Expect = 2e-18 Identities = 183/260 (70%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || || | || ||| |||||| |||||||||||||| | | Sbjct 937655 TGACGCCGGCCTTCTGGTAATCAGCTACCCGCTTCTCGAAGAAGTTGGTCTTGCCACCCA 937596 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTC---GCACC 794007 | ||||| |||||| | ||| ||||||| | |||| |||||| || || Sbjct 937595 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGACCTTGTAGATCTTCTCATTGC-CC 937537 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 |||| ||| |||| ||| || |||||||| ||||||||||| ||| |||| | || Sbjct 937536 AGAGCAACG--AGCAAGCGATCCGCGACGAACTCAATGTACTGCTTCATCAGGGTAGAGT 937479 Query 794068 TCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||||| || || ||||| | ||| | | || || | |||||| ||||| Sbjct 937478 TCATGCCGAGAAGAGCGCAGGGCAATGCCTCAGTCAAGAATTCCTGCTCGATTGTGACGG 937419 Query 794128 CCTCGATGATGATCTGCCTG 794147 | ||| |||| |||| |||| Sbjct 937418 CATCGGTGATAATCT-CCTG 937400 Score = 102 bits (112), Expect = 1e-15 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | |||||||| |||| || || ||||||||||| Sbjct 936952 AAGCAACGGGCCTCGGGGATCTGGACCTCGCCGCTGAATCGCTCGACCAGGTTCTCATTG 936893 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| || ||| ||||| || || |||| ||| || |||| ||| || Sbjct 936892 ACAATGCCATCCGAGGCAGCGAAGAAAGCCAGGATGTGAGAGACGAAGTACTTCTCATCA 936833 Query 796261 TCGCTGAG-CGA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| |||| || | ||||| | ||| | ||| |||| ||||||||||||| Sbjct 936832 TCGTTGAGACGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCGGTC 936773 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 || ||||| ||||||||||| |||||||||| ||| ||| || Sbjct 936772 CAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATCTGT 936731 Score = 102 bits (112), Expect = 1e-15 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||||||||| || |||| ||||||| | | | | ||||||| |||||| ||||| Sbjct 937066 GTGTCGATGGCATTGAACAGGTAGGTCCTT-TGGGTCTGCTCCTTGATGTAGGTATCGAT 937008 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || ||||||||||| ||||||||||| || || |||||||||||| || ||||| Sbjct 937007 GAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 936948 Score = 86.0 bits (94), Expect = 1e-10 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| || |||||||| ||||| |||||| Sbjct 937332 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTC 937273 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||| ||| ||||||||| |||||||| ||||| ||| Sbjct 937272 TTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTCGACAGCGGCGAAG 937213 Query 794461 CCGACGAGCCGCTCGGCAAAAG 794482 | || || |||| || |||| Sbjct 937212 GCAACCAGGCGCTGAGCGAAAG 937191 >seq1 Length=6530789 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 |||||| | ||||||||||||||||| || | || |||||||| ||||||||| | ||| Sbjct 2636414 AACTACTTGGACATCAAGCCCCTCCTAGACGTTGGCTGCAAGACGGTGGCCAACATGATC 2636473 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||| || || || || || ||||| || ||||||| Sbjct 2636474 AAGGGCAAGTCTCCTGAAGAGATTCGGAAGACTTTCAACATCA 2636516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916235124296534