Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 7e-28
seq3 127 1e-24
seq7 93.3 3e-14
>seq5
Length=3459663
Score = 138 bits (152), Expect = 7e-28
Identities = 162/217 (75%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 1049157 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 1049098
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||||||||||||||| || |||||||| | || | |||||||||||
Sbjct 1049097 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 1049038
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || |||| ||| |
Sbjct 1049037 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGA 1048982
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| |||||||||||||| || || ||||||||
Sbjct 1048981 TGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 1048945
>seq3
Length=5051094
Score = 127 bits (140), Expect = 1e-24
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||||||||||||||||||||| ||||| | | || ||||
Sbjct 3316527 AGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCC 3316468
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || ||||||||||| || |||||||| | || | |||||||||||
Sbjct 3316467 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 3316408
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || | ||||||| || ||| ||||| || | ||| ||
Sbjct 3316407 TGAATCTTGCTCTTCAC----GTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAAT 3316352
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| |||||||| || ||||| |||||
Sbjct 3316351 AGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || || | |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 3316071 AGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3316012
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || || ||||| ||||| || |||||||| | || | |||||||||||
Sbjct 3316011 TCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 3315952
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||||| | |||| || | ||| || || | || || |||
Sbjct 3315951 TGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTC 3315892
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || || | |||||| || || |||||||||
Sbjct 3315891 TTGCCTGTCAAGGTCTTGACGAAAATCTGCATG 3315859
Score = 93.3 bits (102), Expect = 3e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||| | |||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 3315843 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3315784
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| || ||||||| || |||||||| | || | |||||||||||
Sbjct 3315783 TCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 3315725
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||||| |||||||||||||| ||||| | | | || | ||
Sbjct 3316299 AGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCC 3316240
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||| || || || ||||| | || | |||||||| ||
Sbjct 3316239 TCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCT 3316180
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | |||| || | |||||| || | || || |||
Sbjct 3316179 TGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTC 3316120
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || |||||||| || ||||| |||||
Sbjct 3316119 TTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
>seq7
Length=2782040
Score = 93.3 bits (102), Expect = 3e-14
Identities = 133/185 (72%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| | || |||| || || ||||| || || ||||
Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 1279395
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || | ||| || || | ||| |||||||| ||||| ||||||||
Sbjct 1279394 -TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 1279336
Query 34964 ACAAA 34968
|| ||
Sbjct 1279335 ACGAA 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692379245614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |