Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 113 3e-20 seq5 91.5 1e-13 >seq3 Length=5051094 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || || | ||| || ||||| || || || ||||| || || | Sbjct 3316086 CCACCGCGCAAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3316027 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || ||||||||||| | |||| | ||||| || || || Sbjct 3316026 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 3315967 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||| | ||| |||||| | || | ||||| || || || Sbjct 3315966 ATACCCTCCTTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACC 3315907 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || ||||| || ||||| || || || |||||||| Sbjct 3315906 TCGAGAGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 >seq5 Length=3459663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| || || || ||||| || || | | |||||| Sbjct 1049159 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1049100 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | |||| | ||||| || || || || ||||| ||| Sbjct 1049099 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1049040 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| ||| || || ||||| || || Sbjct 1049039 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 1048980 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | ||| || || || |||||||| || Sbjct 1048979 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218702344946