Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq3 98.7 9e-16 >seq6 Length=3061052 Score = 134 bits (148), Expect = 1e-26 Identities = 486/752 (65%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 147271 AAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGC 147330 || ||||| || | ||| || | ||| ||||| || ||||| || ||||||| Sbjct 2276759 AAAGCATCAGCGAGACCTTGAACACCCACGCCAATGGGTCGGTGACGCATGTTGCTGT-- 2276702 Query 147331 TTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388 |||| || || | ||| ||||||||| ||||| || |||||||| || || || | Sbjct 2276701 TTCGGGCCTCCTGGACGGGGTAGTGGTTGACGTCAATGATTTTGTTGAGATTGCGGACGA 2276642 Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA--AGTCC-CGTCTTCGACACGTA 147445 | || | ||| | | || |||| |||||| || || || ||| | | || | Sbjct 2276641 CGACCTGAGTGACCTCATGCAGCTTCTGGAAATCGTAGCAGCCCTCGTTGTAGTCAACGA 2276582 Query 147446 CGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGT 147505 | || | || || | ||| ||||| ||||| |||||| ||| || | | ||| || Sbjct 2276581 AGGATGG---CAGAGCCAGAGAAGCCAGGTTGCAAACGGCCACCTCGTCAGGGGCGCAGT 2276525 Query 147506 ACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGC 147565 ||| | ||| |||| ||| |||||| | | || ||| | || | ||| |||| Sbjct 2276524 ACTCGATGATCTCGGTGCAGAGGTTGGAACTTCGGATTGTTCCGAGGTTCTTCTGGTTGC 2276465 Query 147566 TTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTT 147625 | || || ||||| || ||| |||||||| | || |||||||| || | | Sbjct 2276464 TCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGCCT 2276405 Query 147626 CAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTT 147685 | | ||| | ||| | ||| || | || || ||| |||||| | | Sbjct 2276404 CGAGAATAGAGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGGCCGCGACCCTCGCTCT 2276345 Query 147686 CGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACT 147745 ||||| ||| ||||| ||||||||| ||||||||||| ||||| || || || |||| Sbjct 2276344 CGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGACCTGGGCACT 2276285 Query 147746 GATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCG 147805 || || |||||||| | ||| | ||| | | || || ||| |||||||| | Sbjct 2276284 CATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTG 2276225 Query 147806 GCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTT 147865 | | ||| || || | | |||||| || || ||||| ||| ||| Sbjct 2276224 GGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTAC 2276165 Query 147866 TCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCA 147924 ||| | | | || | | | | |||||| ||||| || |||| |||| ||| | || Sbjct 2276164 GCAAGTCGAGGAACTCGA-ATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCG 2276106 Query 147925 CCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACC 147981 || |||| || || |||||||| |||| | || ||||||| || || || | | Sbjct 2276105 CCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGC 2276046 Query 147982 ATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||||| |||| ||| | | || |||||||| Sbjct 2276045 ATGGGGACCAGACCGTTGGATGTTCCGTTGGT 2276014 >seq3 Length=5051094 Score = 98.7 bits (108), Expect = 9e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACT-CTTTTTGAATGTTGTAGTCGCTCATGG 131960 ||||||||| | |||||| || | || || | | || ||||||||||||||||||| || Sbjct 3316309 ACGCAAGCGGAGAACCAAGTGCA-GTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGG 3316251 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || || ||||| || || || | | |||| ||||||||||| || ||||| |||| Sbjct 3316250 TTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGC 3316191 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 | || ||||| || || |||| | || | || || | | ||| ||||| | Sbjct 3316190 CCTCCTTATCTTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCA 3316131 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || || || || || | ||| || ||||| Sbjct 3316130 ACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || ||||||||||||||||||| ||||| ||| || ||||| ||||| | | Sbjct 3316507 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 3316448 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||| || || || || || || || || || ||| || |||| | Sbjct 3316447 GATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 3316388 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | |||||| | | || || || | || | |||||||| ||||| || || | Sbjct 3316387 ATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGAC 3316328 Query 132112 GAAAATCTGCAT 132123 ||| || ||||| Sbjct 3316327 GAAGATTTGCAT 3316316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610568490160