Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq3 98.7 9e-16
>seq6
Length=3061052
Score = 134 bits (148), Expect = 1e-26
Identities = 486/752 (65%), Gaps = 15/752 (2%)
Strand=Plus/Minus
Query 147271 AAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGC 147330
|| ||||| || | ||| || | ||| ||||| || ||||| || |||||||
Sbjct 2276759 AAAGCATCAGCGAGACCTTGAACACCCACGCCAATGGGTCGGTGACGCATGTTGCTGT-- 2276702
Query 147331 TTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388
|||| || || | ||| ||||||||| ||||| || |||||||| || || || |
Sbjct 2276701 TTCGGGCCTCCTGGACGGGGTAGTGGTTGACGTCAATGATTTTGTTGAGATTGCGGACGA 2276642
Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA--AGTCC-CGTCTTCGACACGTA 147445
| || | ||| | | || |||| |||||| || || || ||| | | || |
Sbjct 2276641 CGACCTGAGTGACCTCATGCAGCTTCTGGAAATCGTAGCAGCCCTCGTTGTAGTCAACGA 2276582
Query 147446 CGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGT 147505
| || | || || | ||| ||||| ||||| |||||| ||| || | | ||| ||
Sbjct 2276581 AGGATGG---CAGAGCCAGAGAAGCCAGGTTGCAAACGGCCACCTCGTCAGGGGCGCAGT 2276525
Query 147506 ACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGC 147565
||| | ||| |||| ||| |||||| | | || ||| | || | ||| ||||
Sbjct 2276524 ACTCGATGATCTCGGTGCAGAGGTTGGAACTTCGGATTGTTCCGAGGTTCTTCTGGTTGC 2276465
Query 147566 TTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTT 147625
| || || ||||| || ||| |||||||| | || |||||||| || | |
Sbjct 2276464 TCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGCCT 2276405
Query 147626 CAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTT 147685
| | ||| | ||| | ||| || | || || ||| |||||| | |
Sbjct 2276404 CGAGAATAGAGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGGCCGCGACCCTCGCTCT 2276345
Query 147686 CGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACT 147745
||||| ||| ||||| ||||||||| ||||||||||| ||||| || || || ||||
Sbjct 2276344 CGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGACCTGGGCACT 2276285
Query 147746 GATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCG 147805
|| || |||||||| | ||| | ||| | | || || ||| |||||||| |
Sbjct 2276284 CATTGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTG 2276225
Query 147806 GCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTT 147865
| | ||| || || | | |||||| || || ||||| ||| |||
Sbjct 2276224 GGATCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTAC 2276165
Query 147866 TCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCA 147924
||| | | | || | | | | |||||| ||||| || |||| |||| ||| | ||
Sbjct 2276164 GCAAGTCGAGGAACTCGA-ATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCG 2276106
Query 147925 CCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACC 147981
|| |||| || || |||||||| |||| | || ||||||| || || || | |
Sbjct 2276105 CCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGC 2276046
Query 147982 ATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
||||| |||| ||| | | || ||||||||
Sbjct 2276045 ATGGGGACCAGACCGTTGGATGTTCCGTTGGT 2276014
>seq3
Length=5051094
Score = 98.7 bits (108), Expect = 9e-16
Identities = 157/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACT-CTTTTTGAATGTTGTAGTCGCTCATGG 131960
||||||||| | |||||| || | || || | | || ||||||||||||||||||| ||
Sbjct 3316309 ACGCAAGCGGAGAACCAAGTGCA-GTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGG 3316251
Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020
| || || ||||| || || || | | |||| ||||||||||| || ||||| ||||
Sbjct 3316250 TTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGC 3316191
Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080
| || ||||| || || |||| | || | || || | | ||| ||||| |
Sbjct 3316190 CCTCCTTATCTTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCA 3316131
Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| | ||| || || || || || || | ||| || |||||
Sbjct 3316130 ACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991
||| || ||||||||||||||||||| ||||| ||| || ||||| ||||| | |
Sbjct 3316507 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 3316448
Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051
||| |||||||| || || || || || || || || || ||| || |||| |
Sbjct 3316447 GATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 3316388
Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111
|| | |||||| | | || || || | || | |||||||| ||||| || || |
Sbjct 3316387 ATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGAC 3316328
Query 132112 GAAAATCTGCAT 132123
||| || |||||
Sbjct 3316327 GAAGATTTGCAT 3316316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610568490160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |