Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq3 109 5e-19 >seq6 Length=3061052 Score = 136 bits (150), Expect = 3e-27 Identities = 418/637 (66%), Gaps = 21/637 (3%) Strand=Plus/Minus Query 131613 TGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCA 131672 |||| ||||| || | ||| ||||||||| || || |||||||| |||| ||| || | Sbjct 2276281 TGGGGCACATCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGA 2276222 Query 131673 CCCATAACGCGTACAACAGATCTCTAGCTTT---TTTCTCTTCTGTACCCATAAtttttt 131729 ||| | || | || ||||| | ||| || ||| | || || | || || Sbjct 2276221 TCCAGAGGGCCAAGAAAAGATCACGAGCACGAACTTCCTCCT-TG---CCGTGGTTCTTA 2276166 Query 131730 t-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788 ||| | | || || || | ||| |||||||| || || | ||| | || | ||| Sbjct 2276165 CGCAAGTCGAGGAACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCG 2276106 Query 131789 CCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845 || ||||| || || || | ||||| | | || |||||||| | || || | | Sbjct 2276105 CCAGGACGCTTGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGC 2276046 Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905 ||||| ||| |||||||| |||| ||||| | ||||||| ||| | || | | Sbjct 2276045 ATGGGGACCAGACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCACGG 2275986 Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGT 131964 || ||| |||||||| || ||||| || ||| | ||| ||||| | ||||| | | Sbjct 2275985 ATGCGGTGGACGTTGAGGCCGATACCGCCAGCCAT-TTTGGAGATCATGGCGCAGGTCTT 2275927 Query 131965 TAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGA 132024 || |||| ||||||||| || | |||||| | |||||||| | ||||||||||| Sbjct 2275926 GAGGGTGTCATAGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGA 2275867 Query 132025 CAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTT 132084 || ||| ||| || ||||| || | ||||||| ||||| || || | || Sbjct 2275866 CAGCTGGGACTGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGAAGAACTT 2275807 Query 132085 TTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATCG----CCCAGATGTATGG 132140 | | |||| ||||| | || || ||| || | | |||||||| | Sbjct 2275806 GCTCGACATGAGGTTATACGTCTCAATGACGCGCTCAATGTTGTCTCCCCAGATG--CCG 2275749 Query 132141 TCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGA 132200 || || || |||||| |||||| ||| |||||| | | |||||||| | |||| Sbjct 2275748 ACA--GCAACACGCATGATCATGTGCTGAGGACGCTCGACGATCTTGCCGTCAAGCTTGA 2275691 Query 132201 TCAAATAACCGTTTTCCAAAGTTTTGAAACCAAAATA 132237 | || | ||||||||| ||||| || || || Sbjct 2275690 GGAGGTACGAGCGTTCCAAAGTCTTGAAGCCGAAGTA 2275654 >seq3 Length=5051094 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | ||||| || | || || || ||||| |||||||||||| Sbjct 3316314 CCGCCACGCAAGCGGAGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTC 3316255 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| ||||| || || || || | || ||||||||||| || || || Sbjct 3316254 AAGGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 3316195 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| | |||| | | || | ||||||| | || ||| Sbjct 3316194 ATGCCCTCCTTATCTTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACT 3316135 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||||| || || || || || |||||||||||| Sbjct 3316134 TCCAACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCATA 3316087 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||| ||||||||||||| | || | || || ||||| ||||| ||| | Sbjct 3316506 TCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCCAGCTGCTTACCAGCGAAG 3316447 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| || || || || | |||||| || || |||||| | |||| | | Sbjct 3316446 ATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTA 3316387 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || ||| ||| || || | || |||| ||| |||||||| || || || Sbjct 3316386 TCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGACG 3316327 Query 27237 AAGATTTGCATA 27248 |||||||||||| Sbjct 3316326 AAGATTTGCATA 3316315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933851037872