Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 280 2e-70 seq3 86.0 8e-12 seq10 82.4 1e-10 >seq6 Length=3061052 Score = 280 bits (310), Expect = 2e-70 Identities = 1020/1579 (65%), Gaps = 37/1579 (2%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || ||||| || || |||||| ||||||||||| | ||||||| | || ||||| Sbjct 2277281 ATCTCCCAGACGGTCTTGTAGAGACTCTTGATATCAGCAGGGATATTGGGAATGTTCTGA 2277222 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || || || | | | ||| ||| |||||| | | ||||||||||| || | Sbjct 2277221 ATAGAGCCATTCTCAGCAATGATGCGATTCTTCATGGCATCCGACCAGAGACCCATGTCG 2277162 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 || || |||| | | |||||| | |||||||| || | | | |||| Sbjct 2277161 ACCAGATCCTTGAGCAACCACGGGTTGACGACCTGGAACTCACCAGCCAAGACACGTCTC 2277102 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||| ||||| | ||||| ||||||||||||||||| || || | ||||| | ||| Sbjct 2277101 TGGTAAATGTTGGAAGTGTAAGGTTCAAAGCATTCATTGTTGCCGAGAATTTGCGAGGTA 2277042 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 |||||| ||||| || || | || | ||||| || | ||| | |||||||| | Sbjct 2277041 CTGGCTGTGGGCATGGGAGCTACCAGCAAGCTGTTGCGGATACCGTGCTCCTTGACCTGC 2276982 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCAAACT 110882 || || | ||||| || | || | ||| ||||| |||| |||||||||||| Sbjct 2276981 TCACGAAGGTCCTCCCACTCCCACA-GATCCGATGGCTTCACGTTCC-ACATGTCAAACT 2276924 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || | ||| || ||||| |||| || | || || | || || ||| | Sbjct 2276923 GCAGGATGCCCTCGGAAGCAGGAGATCCCTTGAATGACTCGTAAGGGCCCTGCTCTTTGG 2276864 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | ||| ||| || || ||||| || |||||||||||||| | |||| Sbjct 2276863 CGAGCTCAACCGAAGCCGTCAAGGCGGCGTGGTAAATGGTTTCAAAGATCTGCTTGTTCA 2276804 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAG 111060 ||| || || ||| || || | | || || || ||| |||| ||||| Sbjct 2276803 ACTCACGAGCCTCGGGTGACTCGAAGGGG-AGTCTCAGGGCCAAGAAAG-CATCAGCGAG 2276746 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 |||||||||||||| ||||| |||| ||| ||||| || ||||| || || || Sbjct 2276745 ACCTTGAACACCCACGCCAATGGGTCGGTGACGCATGTTGCTGTTTCGGGCCTCCTGGAC 2276686 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||| || || |||||||| | ||| ||||| | || | || |||| || Sbjct 2276685 GGGGTAGTGGTTGACGTCAATGATTTTGTTGAGATTGCGGACGACGACCTGAGTGACCTC 2276626 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACAT---ACTTTGGAAGGGC 111237 ||| || || | |||| | || ||| | | | || | ||| || || Sbjct 2276625 ATGCAGCTTCTGGAAATCGTAGCAGCC---CTCGTTGTAGTCAACGAAGGATGGCAGAGC 2276569 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 | || |||| |||||||| ||| ||| || | |||||| | || || || Sbjct 2276568 CAGAGAAGCCAGGTTGCAAACGGCCACCTCGTCAGGGGCGCAGTACTCGATGATCTCGGT 2276509 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | ||||||||| || || || | ||||| ||||| ||||| |||||| Sbjct 2276508 GCAGAGGTTGGAACTTCGGATTGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTG 2276449 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||||||||||||| |||| | || ||||| ||||| | | |||||||| | ||| Sbjct 2276448 ATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCAGTCTGGGCCTCGAGAATAGAGTACCA 2276389 Query 111418 -AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGT 111473 | | || | | || | |||| || |||| || ||||| ||||||||| | Sbjct 2276388 CAGCTTCTGGGCCTTG----ATGGTCTTGCGGCCGCGACCCTCGCTCTCGTACTTCTCAT 2276333 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | | ||| ||||||||||| || ||||| |||||||| || | || || | Sbjct 2276332 ACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGACCTGGGCACTCATTGGGGCACA 2276273 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || | ||| | || | ||| || ||||||||||| || ||||| ||||| |||| Sbjct 2276272 TCAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCTGGGATCCAGAGGG 2276213 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | || ||||| | | ||| | || || | || ||||| || || || |||| Sbjct 2276212 CCAAGAAAAGATCACGAGCACGAACTTCCTCCTTGCCGTGGTTCTTACGCAAGTCGAGGA 2276153 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712 |||| | | || || ||||||||||||||||||| || | | || ||||| Sbjct 2276152 ACTCGAATACGTCGGCATGCCATGGCTCAAGATAGATGGCAAAGGCGCC---AGGACGCT 2276096 Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 ||| | || | ||||| | || ||| ||| || || |||||||| || | | Sbjct 2276095 TGTTGCCACCCTGGTCAACATATCTAGCCGTGTTGTTGAAGACCCGAAGCATGGGGACCA 2276036 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 ||| | ||| || || || || ||| || | | || | | |||| Sbjct 2276035 GACCGTTGGATGTTCCGTTGGTACCGGCAATGTAGGAACCAGTAGCACGGATGCGGTGGA 2275976 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 || | || ||||| |||||| || ||||| || || | | || || ||| Sbjct 2275975 CGTTGAGGCCGATACCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCAT 2275916 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 ||||||| | || ||| ||||| || ||| ||||||||| ||||| ||| || | Sbjct 2275915 AGATACCATCAATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGACAGCTG-GGAC 2275857 Query 111948 T-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004 | || ||||| ||||||||||| || || | ||||| ||| | | |||| |||| Sbjct 2275856 TGAGGAGTACCGGCATTGAAGAGTGTGGGGGAAGCGTGGGTGA--AGAACTTGCTCGACA 2275799 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | || || ||||| | ||| ||||||| || || |||||||| || || | Sbjct 2275798 TGAGGTTATACGTCTCAATGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACAC 2275739 Query 112065 GCATGAACATGTACTGTGG 112083 |||||| ||||| ||| || Sbjct 2275738 GCATGATCATGTGCTGAGG 2275720 >seq3 Length=5051094 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || || || || || || || |||||| ||||| ||||| || || Sbjct 937339 GTGGAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCC 937280 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||||| ||| ||| ||||||||||| ||| Sbjct 937279 ACGCTTCTTGAGCCAGAAGATTGAGGCGAATGCGCCGCTGAAAAAGATACCCTCGACAGC 937220 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTG 122848 || || |||| ||||| | ||||| ||| ||| ||| | | | |||| || | Sbjct 937219 GGCGAAGGCAACCAGGCGCTGAGCGAAAGAG-GAGTCCTTATCCTGGATCCATCGGATGG 937161 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 |||| | |||||||| ||| || || || || Sbjct 937160 CCCAATCGGCCTTCTTGCGAATGCAAGGGACTGT 937127 >seq10 Length=2523473 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/227 (68%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 181821 AGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAG 181880 || |||| ||| || | ||| | ||||||||| ||| | |||||| ||||| | || Sbjct 21091 AGTCGCGAACCGAAGTTACCGCTTGGCTCAAGGCAGTTGACGTTGTTGGAACCGACAAAG 21150 Query 181881 TCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGAC 181940 | | ||||| || |||||| | ||| || || |||||||||||||| || | Sbjct 21151 TTCTGCGCCAAACCAATGATGGTCTGTTGAAGCGAAACCTCACCGTGGTGGTAGGCAGTG 21210 Query 181941 TTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTG---AGGTTCTTG 181997 | | | ||| ||| | | ||| | || |||||| | ||| ||| | |||| | Sbjct 21211 TGGCCACCAATGTATCCAGACAATTCGGCAACCTTC---TGATCCTTGACCAAGTTCCTC 21267 Query 181998 TGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 | |||||| ||||||| || || || || |||||| |||||||| Sbjct 21268 TTGAAGCAGCCATACATGACCTTTCTTTGACCAGGCTTCAGACCATC 21314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031167857600