Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 149 2e-30 seq3 125 2e-23 seq5 96.9 1e-14 seq7 95.1 4e-14 seq1 86.0 2e-11 >seq6 Length=3061052 Score = 149 bits (164), Expect = 2e-30 Identities = 515/801 (64%), Gaps = 2/801 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || || ||||| | || ||| || | |||||| || || | Sbjct 1842792 CCCGAGGAAATCTCCTCCATGGTCCTCACCAAGATGCGTGAGACTGCTGAGGCCTACCTC 1842851 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| || || | | ||||| |||| || || ||||| || || || ||||||| Sbjct 1842852 GGTACCACCGTCAACAACGCTGTCGTTACCGTTCCCGCCTACTTCAACGACAGCCAGCGT 1842911 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || || || || | || || || | || || || ||| Sbjct 1842912 CAGGCTACCAAGGACGCCGGTTTGATCGCCGGCCTCAACGTCCTCCGTATCATCAACGAA 1842971 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || ||||| || || ||||| || | | || || || | Sbjct 1842972 CCCACCGCCGCTGCCATTGCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTC 1843031 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | ||||||||||| || ||||| || || || || | || ||||| Sbjct 1843032 CTCATCTTCGATCTTGGTGGTGGTACCTTCGATGTTTCCCTCCTGACCATCGAGGAGGGT 1843091 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | || |||||||| || || | ||||| || || || || || Sbjct 1843092 ATCTTCGAGGTCAAGTCTACCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAAC 1843151 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 ||||||||| || ||||| || || || ||||| ||||| || | ||| | | Sbjct 1843152 CGTCTCGTTAACCACTTTGTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTCTCTGT 1843210 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || |||| ||||||| || | || || || || ||||| |||||| || | || Sbjct 1843211 CAACAGCCGAGCCCTGCGTCGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGTACCCTCTC 1843270 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| || | || ||||| || || || || ||||| || || | || |||| | Sbjct 1843271 TTCTTCTGCTCAGACCTCGATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTACAC 1843330 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || |||||||| || || || | || |||||| || || | || || | Sbjct 1843331 CTCCATCACCCGTGCTCGTTTCGAGGAGCTTTGCCAGGATCTCTTCCGATCCACCATCCA 1843390 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 || || || || | ||||| || || ||| | | | | || | || Sbjct 1843391 GCCCGTCGACCGCGTGCTGTCTGATGCTAAGATCGACAAGAGCCTTGTCCACGAGATCGT 1843450 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | || |||||||| || ||||| || | || || | | | || | || || Sbjct 1843451 CCTCGTCGGTGGTTCCACCCGTATCCCCCGTATCCAGAAGCTCATCACCGACTACTTCAA 1843510 Query 350251 TGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGT 350310 || || || || | || || || || ||||| |||||||| || |||||||| || Sbjct 1843511 CGGAAAGGAGCCCAACAAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGT 1843570 Query 350311 TCAGGCATCTATTTTATCTGG 350331 |||||| | ||| | ||||| Sbjct 1843571 TCAGGCTGCGATTCTCTCTGG 1843591 >seq3 Length=5051094 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || ||||| || || || ||||| || || || || || || Sbjct 3315862 CATGCCACCTCGGAGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3315803 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || |||||||||||||| | ||| ||||| ||||| Sbjct 3315802 GGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGG 3315743 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || ||||| || || | |||||| || Sbjct 3315742 AGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGCTCTC 3315683 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| ||||| Sbjct 3315682 GACCTCGAGAGTGATGGTCTTGCCGGT 3315656 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || || | ||||| ||||| || || ||||| || || || || | Sbjct 3316094 TTTGCATACCACCGCGCAAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGT 3316035 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| ||||| ||||| || || || || ||||| | Sbjct 3316034 AGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGT 3315975 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || || || || || | || ||||| || |||| || || Sbjct 3315974 CAGGAGGGATACCCTCCTTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGC 3315915 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| || || | || || || ||||||||||| Sbjct 3315914 TCTCAACCTCGAGAGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 Score = 116 bits (128), Expect = 1e-20 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| || | ||||| | || || || || || ||||| || | Sbjct 3316322 TTTGCATACCGCCACGCAAGCGGAGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGT 3316263 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || ||||| || || || ||||| || ||||||||||| ||||| || || | Sbjct 3316262 AGTCGCTCAAGGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGT 3316203 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 ||||||| || || || ||||| || || || ||| || || || ||||||| || ||| Sbjct 3316202 CAGGAGGGATGCCCTCCTTATCTTGGATCTT-GCTCTTCACGTTGTCAATCGTGTCTGAT 3316144 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| | || | ||||| ||||| || || || || || || ||||| Sbjct 3316143 GACTCGACTTCCAACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 >seq5 Length=3459663 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| || || || || || || || Sbjct 1049172 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1049113 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || ||||| || ||||| || || ||||| || || || Sbjct 1049112 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1049053 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || ||||| || || | || || | || || Sbjct 1049052 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCAC 1048993 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 1048992 CTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 1048945 >seq7 Length=2782040 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| |||||||| || || || || ||||| || || | || ||||| || Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | || || || || || | ||||| || || || || || || ||| Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1279330 >seq1 Length=6530789 Score = 86.0 bits (94), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||| || || |||||||| || Sbjct 5178223 CGAGGCACACCGAGGGTGACGTTC---TTGGAGGAAACACCGGCGAAATGGAAAGTGTTC 5178167 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | ||||| | ||||||||||| ||||| || || | || ||||||||||| Sbjct 5178166 AACGTCATCTGAGTCGCAGGCTCACCAATGGACTGAGCGGCCAAGACACCAACCATTTCA 5178107 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 5178106 CCAGGGTTGACAA 5178094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252342095118