Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 104 1e-17 seq5 89.7 3e-13 >seq3 Length=5051094 Score = 104 bits (114), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| |||||| || ||||| || || || || || || |||| ||||| || Sbjct 3316063 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTG 3316004 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| || || || || | ||||| ||||| || || | |||||||||||| |||| | Sbjct 3316003 TTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATC-T 3315945 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| || || | || ||||| |||||| || || | || ||||| || || | Sbjct 3315944 TTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTCTTGCCTG 3315885 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || |||||||||||| Sbjct 3315884 TCAAGGTCTTGACGAAAATCTGCATG 3315859 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||||| ||||| |||||||| || || | ||||| |||| || Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGCCGTCCTCG 3316237 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || || ||||| || | |||||||||||| || || | |||||||| ||| | Sbjct 3316236 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTGG 3316177 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || ||| | ||| |||||| ||| ||||||| || ||||| || Sbjct 3316176 ATC-TTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTT 3316118 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || ||||| Sbjct 3316117 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || || | ||| | ||||| ||| |||||| || ||||| || || || Sbjct 3315859 GCCACCTCGGAGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315800 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | |||||||| || || || ||||| || |||||||| ||||| || || Sbjct 3315799 CAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 3315740 Query 34599 CACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 3315739 AATGCCCTCCTTGTC 3315725 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536 |||||| | ||||| | |||| ||||| ||||||||||| |||||||| || || | Sbjct 3316543 GCCGCCACGGAGACGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 3316484 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| || | || || || || ||||| || || || | |||||| ||||| || Sbjct 3316483 CAAAGTA--CGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGG 3316426 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655 || | ||||||||||| ||| || | || ||| || || || || | || Sbjct 3316425 GGGATACCCTCCTTGTC-CTGAATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTC 3316367 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| || |||||||| || | || || || || || ||||| Sbjct 3316366 GACCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 >seq5 Length=3459663 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||||| || || ||| |||||| || ||||| || || || || || || Sbjct 1049162 AGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1049103 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||| ||||| || || | |||||| Sbjct 1049102 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 1049043 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || || | || ||||| |||||| || | ||| Sbjct 1049042 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGT 1048984 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || ||||| || | || || || ||||||||||| ||| Sbjct 1048983 GATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 1048941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729193408698