Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
>seq2
Length=5234762
Score = 134 bits (148), Expect = 1e-26
Identities = 373/569 (66%), Gaps = 61/569 (11%)
Strand=Plus/Plus
Query 6502 CTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAG 6561
|| ||||||| || |||||||| || ||||| || ||| ||||| |||||| ||
Sbjct 1830071 CTCGGGGAACTCGCGCGGCTCTCGCTGGAGCTGTGTCTCGAGTGCCTCGACGTGGTTGAG 1830130
Query 6562 GTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGAC 6618
||||| ||||| || |||| |||| | ||| || || ||||| | ||| ||
Sbjct 1830131 GTAGACGTGCGCGTCGCCCATGACGTGGGT--CAGGCTGCCGGGCACCAAGTCGCAC-AC 1830187
Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678
|||||| | ||| | ||||||||| ||||| || || |||||||| ||||| || | |||
Sbjct 1830188 ATGAGCCAGCATATGCGTGAGCAGCGCGTAGCTTGCGATGTTGAAGGGCACGCCAAGCCC 1830247
Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG---------------------CTC 6717
|||||| | || ||||| ||||| |||||| ||| |||
Sbjct 1830248 CATGTCGCAGGAGCGTTGGTAGAGTTGGCAGTGCAGATGGCCCTTGGGCTTTTCTTGCTC 1830307
Query 6718 CCCATTCGCG------------------------ACGTAGAATTGGCAGAGGGTGTGGCA 6753
|| ||| || |||||||| ||| | |||||||
Sbjct 1830308 GCCGTTCTCGGCACCGCGCTGCCGTGGGAAAGAAACGTAGAACTGGGCAAACATGTGGCA 1830367
Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813
|| || || ||||||| || ||||| || || ||||| || | | | | ||||
Sbjct 1830368 GGGCGGCAGAACCATCAGGGGTAGATCTTTAGGATTCCAAGCACTGAGTATAAGTCTTCG 1830427
Query 6814 GTCATCAGGGTTCCGCTTCAAG-GTGTCGATCACGTACTGCA-GCTGGTCCGCTCCCTGT 6871
||| | |||||| | ||| |||| ||| | | |||| ||||||| |||||
Sbjct 1830428 GTCGTAGGGGTTC-GTGCGAAGAGTGTGGATGAT-TCGTGCAAGCTGGTCGTAGCCCTGA 1830485
Query 6872 CCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCC 6930
|| | || || | |||||| | || || ||||| || || || | ||| ||||| ||
Sbjct 1830486 CCTGTGTAATCGGTCTTCGCATCGACG-TATTCCGCGCCGAAATGGCGCCATTGGAAACC 1830544
Query 6931 GTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG--AACCCCCGCTTGTCCAGAAAG 6988
||| || ||||| | ||| ||| |||| ||| |||| | ||| | || ||||||||
Sbjct 1830545 GTAAACGGGGCCTAGGTCTCCCACCTCTCGA--TGGGTCAGCCCGAGATTATCCAGAAAC 1830602
Query 6989 TCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|| || || |||| |||||||||||||
Sbjct 1830603 TCGCGGGATCCGTTGCCGTCCCAGATCTT 1830631
Score = 134 bits (148), Expect = 1e-26
Identities = 373/569 (66%), Gaps = 61/569 (11%)
Strand=Plus/Minus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--CCCATCTC 34385
||||||||||||| |||| || || || |||||||| || | ||| | |||| ||
Sbjct 1830631 AAGATCTGGGACGGCAACGGATCCCGCGAGTTTCTGGATAATCTCGGGCTGACCCA--TC 1830574
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
| |||| ||| ||| | ||||| || ||||| ||||| ||| | || || || ||||| |
Sbjct 1830573 GAGAGGTGGGAGACCTAGGCCCCGTTTACGGTTTCCAATGGCGCCATTTCGGCGCGGAAT 1830514
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGC-TGCAGTACGTGAT 34503
| || | |||||| | || || | || ||||| ||||||| |||| | | ||
Sbjct 1830513 A-CGTCGATGCGAAGACCGATTACACAGGTCAGGGCTACGACCAGCTTGCACGA-ATCAT 1830456
Query 34504 CGACAC-CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGA 34562
| |||| ||| | |||||| | ||| |||| | | | | || ||||| || |
Sbjct 1830455 CCACACTCTTCGCAC-GAACCCCTACGACCGAAGACTTATACTCAGTGCTTGGAATCCTA 1830397
Query 34563 AGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT----- 34617
| ||||| || ||||||| || || || ||||||| | ||| ||||||||
Sbjct 1830396 AAGATCTACCCCTGATGGTTCTGCCGCCCTGCCACATGTTTGCCCAGTTCTACGTTTCTT 1830337
Query 34618 -------------------CGCGAATGGGGAG---------------------CTGTCCT 34637
|| ||| || ||| ||| ||
Sbjct 1830336 TCCCACGGCAGCGCGGTGCCGAGAACGGCGAGCAAGAAAAGCCCAAGGGCCATCTGCACT 1830277
Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697
|||| ||||| ||||| || | ||||||||| | || ||||| |||||||| || || |
Sbjct 1830276 GCCAACTCTACCAACGCTCCTGCGACATGGGGCTTGGCGTGCCCTTCAACATCGCAAGCT 1830217
Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGGTG 34756
|||| ||||||||| | ||| | |||||||| ||| | ||||| || || |||
Sbjct 1830216 ACGCGCTGCTCACGCATATGCTGGCTCATGT-GTGCGACTTGGTGCCCGGCAGCCTG--A 1830160
Query 34757 CATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
| |||| |||| || ||||| ||||||| |||||| ||||| ||| || ||||
Sbjct 1830159 CCCACGTCATGGGCGACGCGCACGTCTACCTCAACCACGTCGAGGCACTCGAGACACAGC 1830100
Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAG 34843
| || |||||||| || ||||||| ||
Sbjct 1830099 TCCAGCGAGAGCCGCGCGAGTTCCCCGAG 1830071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448261806052320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |