Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 >seq2 Length=5234762 Score = 134 bits (148), Expect = 1e-26 Identities = 373/569 (66%), Gaps = 61/569 (11%) Strand=Plus/Plus Query 6502 CTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAG 6561 || ||||||| || |||||||| || ||||| || ||| ||||| |||||| || Sbjct 1830071 CTCGGGGAACTCGCGCGGCTCTCGCTGGAGCTGTGTCTCGAGTGCCTCGACGTGGTTGAG 1830130 Query 6562 GTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGAC 6618 ||||| ||||| || |||| |||| | ||| || || ||||| | ||| || Sbjct 1830131 GTAGACGTGCGCGTCGCCCATGACGTGGGT--CAGGCTGCCGGGCACCAAGTCGCAC-AC 1830187 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 |||||| | ||| | ||||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 1830188 ATGAGCCAGCATATGCGTGAGCAGCGCGTAGCTTGCGATGTTGAAGGGCACGCCAAGCCC 1830247 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG---------------------CTC 6717 |||||| | || ||||| ||||| |||||| ||| ||| Sbjct 1830248 CATGTCGCAGGAGCGTTGGTAGAGTTGGCAGTGCAGATGGCCCTTGGGCTTTTCTTGCTC 1830307 Query 6718 CCCATTCGCG------------------------ACGTAGAATTGGCAGAGGGTGTGGCA 6753 || ||| || |||||||| ||| | ||||||| Sbjct 1830308 GCCGTTCTCGGCACCGCGCTGCCGTGGGAAAGAAACGTAGAACTGGGCAAACATGTGGCA 1830367 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 || || || ||||||| || ||||| || || ||||| || | | | | |||| Sbjct 1830368 GGGCGGCAGAACCATCAGGGGTAGATCTTTAGGATTCCAAGCACTGAGTATAAGTCTTCG 1830427 Query 6814 GTCATCAGGGTTCCGCTTCAAG-GTGTCGATCACGTACTGCA-GCTGGTCCGCTCCCTGT 6871 ||| | |||||| | ||| |||| ||| | | |||| ||||||| ||||| Sbjct 1830428 GTCGTAGGGGTTC-GTGCGAAGAGTGTGGATGAT-TCGTGCAAGCTGGTCGTAGCCCTGA 1830485 Query 6872 CCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCC 6930 || | || || | |||||| | || || ||||| || || || | ||| ||||| || Sbjct 1830486 CCTGTGTAATCGGTCTTCGCATCGACG-TATTCCGCGCCGAAATGGCGCCATTGGAAACC 1830544 Query 6931 GTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG--AACCCCCGCTTGTCCAGAAAG 6988 ||| || ||||| | ||| ||| |||| ||| |||| | ||| | || |||||||| Sbjct 1830545 GTAAACGGGGCCTAGGTCTCCCACCTCTCGA--TGGGTCAGCCCGAGATTATCCAGAAAC 1830602 Query 6989 TCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || || || |||| ||||||||||||| Sbjct 1830603 TCGCGGGATCCGTTGCCGTCCCAGATCTT 1830631 Score = 134 bits (148), Expect = 1e-26 Identities = 373/569 (66%), Gaps = 61/569 (11%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--CCCATCTC 34385 ||||||||||||| |||| || || || |||||||| || | ||| | |||| || Sbjct 1830631 AAGATCTGGGACGGCAACGGATCCCGCGAGTTTCTGGATAATCTCGGGCTGACCCA--TC 1830574 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | |||| ||| ||| | ||||| || ||||| ||||| ||| | || || || ||||| | Sbjct 1830573 GAGAGGTGGGAGACCTAGGCCCCGTTTACGGTTTCCAATGGCGCCATTTCGGCGCGGAAT 1830514 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGC-TGCAGTACGTGAT 34503 | || | |||||| | || || | || ||||| ||||||| |||| | | || Sbjct 1830513 A-CGTCGATGCGAAGACCGATTACACAGGTCAGGGCTACGACCAGCTTGCACGA-ATCAT 1830456 Query 34504 CGACAC-CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGA 34562 | |||| ||| | |||||| | ||| |||| | | | | || ||||| || | Sbjct 1830455 CCACACTCTTCGCAC-GAACCCCTACGACCGAAGACTTATACTCAGTGCTTGGAATCCTA 1830397 Query 34563 AGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT----- 34617 | ||||| || ||||||| || || || ||||||| | ||| |||||||| Sbjct 1830396 AAGATCTACCCCTGATGGTTCTGCCGCCCTGCCACATGTTTGCCCAGTTCTACGTTTCTT 1830337 Query 34618 -------------------CGCGAATGGGGAG---------------------CTGTCCT 34637 || ||| || ||| ||| || Sbjct 1830336 TCCCACGGCAGCGCGGTGCCGAGAACGGCGAGCAAGAAAAGCCCAAGGGCCATCTGCACT 1830277 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 |||| ||||| ||||| || | ||||||||| | || ||||| |||||||| || || | Sbjct 1830276 GCCAACTCTACCAACGCTCCTGCGACATGGGGCTTGGCGTGCCCTTCAACATCGCAAGCT 1830217 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGGTG 34756 |||| ||||||||| | ||| | |||||||| ||| | ||||| || || ||| Sbjct 1830216 ACGCGCTGCTCACGCATATGCTGGCTCATGT-GTGCGACTTGGTGCCCGGCAGCCTG--A 1830160 Query 34757 CATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 | |||| |||| || ||||| ||||||| |||||| ||||| ||| || |||| Sbjct 1830159 CCCACGTCATGGGCGACGCGCACGTCTACCTCAACCACGTCGAGGCACTCGAGACACAGC 1830100 Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | || |||||||| || ||||||| || Sbjct 1830099 TCCAGCGAGAGCCGCGCGAGTTCCCCGAG 1830071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261806052320