Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq5 154 3e-32 seq7 134 3e-26 >seq3 Length=5051094 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | ||||| | || || Sbjct 3316071 AGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3316012 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| ||||| || ||||| || ||||||||||| | || |||||||| Sbjct 3316011 TCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 3315952 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || ||||| ||||| ||||| ||||||||||||||||||||| Sbjct 3315951 TGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTC 3315892 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 3315891 TTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 Score = 163 bits (180), Expect = 7e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3315843 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3315784 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | || || ||||||||||||| || ||||||||| Sbjct 3315783 TCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 3315724 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| |||||||| || |||||||||||||| ||| Sbjct 3315723 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTGATGGTC 3315664 Query 211083 TTTCCCGT 211090 || || || Sbjct 3315663 TTGCCGGT 3315656 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 ||||| ||||| || ||| ||| || || ||||| || || | ||| | | | ||||| Sbjct 3316527 AGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TACGACCATC 3316469 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||||||||| || |||||||| || || || |||||||| || | || |||||||| Sbjct 3316468 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 3316409 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| |||||||| |||||||| || | ||| ||||| | || || || Sbjct 3316408 CTGAATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGT 3316349 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | ||||| Sbjct 3316348 TTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || ||| || || || ||||| || || | ||||| || || || Sbjct 3316299 AGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGG-CCGTC 3316241 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || || |||||||| || |||||||| || |||||||||||||| | || ||||| || Sbjct 3316240 CTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATC 3316181 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| |||||||| || || ||||| || || || || | |||||||| Sbjct 3316180 TTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGT 3316121 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || ||||| || || | ||||| Sbjct 3316120 CTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 >seq5 Length=3459663 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 1049156 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1049097 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 1049096 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1049037 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 1049036 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 1048977 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 1048976 TTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942 >seq7 Length=2782040 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | ||||| || ||||||||||| || ||||| Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||||||||| | || ||||||||||||||||| || || || ||| Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150425726690