Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3 170 4e-37
seq5 154 3e-32
seq7 134 3e-26
>seq3
Length=5051094
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 3316071 AGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3316012
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||| ||||| ||||| || ||||| || ||||||||||| | || ||||||||
Sbjct 3316011 TCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 3315952
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 3315951 TGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTC 3315892
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 3315891 TTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860
Score = 163 bits (180), Expect = 7e-35
Identities = 149/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 3315843 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3315784
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| | || || ||||||||||||| || |||||||||
Sbjct 3315783 TCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 3315724
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||| |||||||| || |||||||||||||| |||
Sbjct 3315723 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTGATGGTC 3315664
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 3315663 TTGCCGGT 3315656
Score = 125 bits (138), Expect = 2e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
||||| ||||| || ||| ||| || || ||||| || || | ||| | | | |||||
Sbjct 3316527 AGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TACGACCATC 3316469
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||||||||||| || |||||||| || || || |||||||| || | || ||||||||
Sbjct 3316468 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 3316409
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| ||||| |||||||| |||||||| || | ||| ||||| | || || ||
Sbjct 3316408 CTGAATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGT 3316349
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | |||||
Sbjct 3316348 TTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
Score = 111 bits (122), Expect = 4e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|| || | ||| || ||| || || || ||||| || || | ||||| || || ||
Sbjct 3316299 AGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGG-CCGTC 3316241
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| || |||||||| || |||||||| || |||||||||||||| | || ||||| ||
Sbjct 3316240 CTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATC 3316181
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
|||||||| |||||||| || || ||||| || || || || | ||||||||
Sbjct 3316180 TTGGATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGT 3316121
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || || ||||| || || | |||||
Sbjct 3316120 CTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
>seq5
Length=3459663
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 1049156 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1049097
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 1049096 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1049037
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 1049036 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 1048977
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 1048976 TTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942
>seq7
Length=2782040
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || | ||||| | ||||| || ||||||||||| || |||||
Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || ||||||||||| | || ||||||||||||||||| || || || |||
Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| || || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150425726690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |