Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 3e-20
seq3 113 1e-19
seq7 89.7 1e-12
>seq5
Length=3459663
Score = 114 bits (126), Expect = 3e-20
Identities = 157/216 (73%), Gaps = 5/216 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | || | || || || |
Sbjct 1049151 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGA 1049093
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||||||||| || | ||||||||| | | ||| || ||||| || ||
Sbjct 1049092 GCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 1049035
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || |||||| | || | | |||| ||| ||| || ||||| || || || ||
Sbjct 1049034 GATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTT 1048975
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|||||||| ||||| ||||| | |||||| || ||
Sbjct 1048974 ACCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 1048939
>seq3
Length=5051094
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| || ||||||||||| |||| | || | || ||
Sbjct 3316071 AGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3316012
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || ||||| || || | ||||||||| | | ||| || ||||| |||
Sbjct 3316011 TCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 3315952
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || ||| |||||| | || | |||| || ||||| || || ||||| || ||
Sbjct 3315951 TGGATCTTTGACTTGACATTGTCGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTC 3315892
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | ||||| ||||| | ||||||
Sbjct 3315891 TTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| |||| | || | ||||||
Sbjct 3315843 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3315784
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| | | ||||||||| | | || || ||||| |
Sbjct 3315783 TCAAGCTGCTTT--CCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGT 3315726
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || |||||| | || | | | || || ||||| || || ||||| || |
Sbjct 3315725 CCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTGATGG 3315666
Query 152071 TTTTGCCCGT 152080
| ||||| ||
Sbjct 3315665 TCTTGCCGGT 3315656
Score = 87.8 bits (96), Expect = 4e-12
Identities = 154/221 (70%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||| || || |||||||| ||| ||||| |
Sbjct 3316534 GAGACGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACG 3316475
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || |||||||| || | ||||||||| | | ||| || ||
Sbjct 3316474 ACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTC 3316415
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGA 152063
||| || ||||| || || || | || | | | || || | || || ||||
Sbjct 3316414 CTTGTCCTGAATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGAC-CTCCAAG- 3316357
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||||| ||||| || ||||| ||||||| |||||
Sbjct 3316356 GTAATAGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
>seq7
Length=2782040
Score = 89.7 bits (98), Expect = 1e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| || |||||||| |||| | |||| ||||| || || || || || |||||
Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||| | | ||| || ||||| || || || || |||||| | ||
Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| ||| ||| || || || || || || |||||||| || |||||||||||
Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1279331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153819232967126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |