Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 185 2e-41 seq5 174 3e-38 seq7 147 5e-30 >seq3 Length=5051094 Score = 185 bits (204), Expect = 2e-41 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| ||||| || ||||| | ||| || || |||||||||||||| | Sbjct 3316087 ACCACCGCGCAAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3316028 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || ||||| || || || |||| || || |||||| || Sbjct 3316027 GAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGG 3315968 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 ||||||||||||||||||||||||| || || | ||||| ||||| || ||| || | Sbjct 3315967 GATACCCTCCTTGTCTTGGATCTTTGACTTGACATTGTCGATCGTGTCGGA-GCTCTCAA 3315909 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 3315908 CCTCGAGAGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCAT 3315860 Score = 161 bits (178), Expect = 2e-34 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| ||||||| ||| || |||| || | |||||||| || || ||||||||||| Sbjct 3316315 ACCGCCACGCAAGCGGAGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCT 3316256 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||| ||||| ||||| || || |||||||| | ||| ||||||||| | Sbjct 3316255 CAAG-GTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAG 3316197 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || |||||||| ||||||||||| ||| || ||| | || || ||||| || | ||| Sbjct 3316196 GGATGCCCTCCTTATCTTGGATCTT-GCTCTTCACGTTGTCAATCGTGTCTGATGACTCG 3316138 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||||| || || | ||||| ||||| || ||||| Sbjct 3316137 ACTTCCAACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 152 bits (168), Expect = 1e-31 Identities = 159/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| || || || | ||| || || |||||||||||||| | Sbjct 3315858 CCACCTCGGAGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3315799 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||||||||| || |||||| ||| Sbjct 3315798 AGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 3315739 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || ||||||||||| || ||||| | || || | ||||| || || || ||| ||||| Sbjct 3315738 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGA-GCTCTCGAC 3315680 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||||||||| ||||| || |||| Sbjct 3315679 CTCGAGAGTGATGGTCTTGCCGGTCA 3315654 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | ||||| || || || ||||||||||| Sbjct 3316542 CCGCCACGGAGACGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 3316483 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| || || || || || ||||||| ||| || |||||| || Sbjct 3316482 AAAGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 3316423 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||| ||||| || ||| ||||||| || || | |||||| Sbjct 3316422 ATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGAC 3316364 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || || |||||||||| ||||| ||||| || ||||| Sbjct 3316363 CTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 >seq5 Length=3459663 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||| || || |||||||||||||| | Sbjct 1049172 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1049113 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 1049112 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1049053 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| |||||||||| || || Sbjct 1049052 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCCAC 1048993 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||||||||| | ||||| ||||| |||||||| || Sbjct 1048992 CTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942 >seq7 Length=2782040 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | || || ||||||||||| || || || || ||||||||| Sbjct 1279509 TTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 1279450 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || |||||| || |||||||||||||| |||||||| | || || | ||| Sbjct 1279449 AGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1279390 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| |||| || || ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 1279389 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737778397324