Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01] 106 sequences; 43,681,955 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 seq5 141 7e-29 seq7 118 8e-22 >seq3 Length=5051094 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||||||||||| || |||||||| ||| | || | || ||| Sbjct 3316524 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCCTCC 3316465 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||||||| || | || | ||| ||||| ||| Sbjct 3316464 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 3316405 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| ||| |||||| ||||||| ||||| || || Sbjct 3316404 ATCTTGCTCTTCACGTTATCGATGGTATCGCTGGATTCGACCTCCAAGGTAATAGTTTTA 3316345 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| |||||||||||||| Sbjct 3316344 CCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||||| ||||| || |||||||| ||| | || | || |||| || Sbjct 3316296 ACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTCAAGGTTCGGC-CGTCCTC 3316238 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || |||||||| | |||||| || || | ||| | || ||||| || Sbjct 3316237 GAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCTTG 3316178 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || || || |||| ||| |||||||| Sbjct 3316177 GATCTTGCTCTTCACGTTGTCAATCGTGTCTGATGACTCGACTTCCAACGTGATCGTCTT 3316118 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| |||||||||||||| Sbjct 3316117 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 3316068 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 3316009 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || |||| |||||||| || | ||| | ||| ||||| || Sbjct 3316008 AGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGG 3315949 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| | || ||||| | || ||||||| Sbjct 3315948 ATCTTTGACTTGACATTGT--CGATCGTGTCGGAGCTCTCAACCTCGAGAGTGATCGTCT 3315891 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| ||||| || |||||| Sbjct 3315890 TGCCTGTCAAGGTCTTGACGAAAATCTGCATG 3315859 Score = 102 bits (112), Expect = 6e-17 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | | ||| ||||| || ||| |||||| ||||||||||| || Sbjct 3315862 CATGCCACCTCGGAGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3315803 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||||||||||||| || | Sbjct 3315802 GGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCAGG 3315743 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| |||||| ||| || ||| | ||||| || | | Sbjct 3315742 AGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CGATGGTATCAGAGCTC 3315685 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || ||||| | || || ||||| || || Sbjct 3315684 TCGACCTCGAGAGTGATGGTCTTGCCGGT 3315656 >seq5 Length=3459663 Score = 141 bits (156), Expect = 7e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||| |||||| ||||||||||| |||| | Sbjct 1049171 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1049112 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| ||||| ||||||| |||||||| || | || Sbjct 1049111 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1049052 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||| | || |||| Sbjct 1049051 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCCGAAGACTCCA 1048994 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| |||||||||||||| ||||| || ||||| Sbjct 1048993 CCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 1048945 >seq7 Length=2782040 Score = 118 bits (130), Expect = 8e-22 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| |||| || || | || || |||||||| || ||||||| Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | ||| | ||| ||||| ||| ||||| ||| || ||| Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1279392 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| || |||||||| | || || ||||| ||||| ||||||||||| Sbjct 1279391 --CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1279334 Query 44326 GAA 44328 ||| Sbjct 1279333 GAA 1279331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989934937402