Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Memnoniella_20echinata_20[genbank_20GCA_5F001599555.1_202016-03-01]
106 sequences; 43,681,955 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq5 174 1e-38
seq3 145 7e-30
seq7 120 3e-22
seq1 87.8 2e-12
>seq5
Length=3459663
Score = 174 bits (192), Expect = 1e-38
Identities = 179/232 (77%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||||| ||| ||||||||| ||||| |||||||||
Sbjct 1049171 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1049112
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | |||
Sbjct 1049111 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1049052
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||| |||||||
Sbjct 1049051 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCCGAAGACTCCA 1048994
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || || || |||||||| || ||||| |||||||||||||| ||
Sbjct 1048993 CCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1048942
>seq3
Length=5051094
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | ||||| || || |||||||||||||||||||| ||||||
Sbjct 3316543 GCCGCCACGGAGACGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 3316484
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| || || | || || |||||||| || ||||| ||||| ||||| ||||| | |||
Sbjct 3316483 CAAAGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGG 3316424
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| || || |||| ||| | | || ||||| || || |
Sbjct 3316423 GATACCCTCCTTGTCCTGAATCTTGCTCTTC-ACGTTATCGATGGTATCGCTGGATTCGA 3316365
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || |||||||||||||| ||||| ||||| || |||||
Sbjct 3316364 CCTCCAAGGTAATAGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 3316316
Score = 143 bits (158), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| | ||| | || ||||| || ||| ||||||||| ||||| |||||||||
Sbjct 3316086 CCACCGCGCAAACGAAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3316027
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||| ||||| ||||| ||||||||||| ||||| | ||
Sbjct 3316026 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 3315967
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | ||||||||| ||| ||| ||| || | || | |||||| ||| |
Sbjct 3315966 ATACCCTCCTTGTCTTGGATCTTTGACTTGACATTGTCG--ATCGTGTCGGAGCTCTCAA 3315909
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || ||||| || || |||| ||||| |||||||||||||||
Sbjct 3315908 CCTCGAGAGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCATG 3315859
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || | || | |||| ||||| ||||| |||||||||||||| ||||||
Sbjct 3316314 CCGCCACGCAAGCGGAGAACCAAGTGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCGCTC 3316255
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || |||| ||||| |||||||| || || || || ||||||||||| | ||
Sbjct 3316254 AAGGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 3316195
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| || ||| || |||| ||| | | | ||||| ||||| ||
Sbjct 3316194 ATGCCCTCCTTATCTTGGATCTTGCTCTTC-ACGTTGTCAATCGTGTCTGATGACTCGAC 3316136
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| ||||| || || || || ||||| ||||| || |||||
Sbjct 3316135 TTCCAACGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 3316088
>seq7
Length=2782040
Score = 120 bits (132), Expect = 3e-22
Identities = 138/184 (75%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| |||||||| ||||| || | || |||||||||||||| || || |
Sbjct 1279511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 1279452
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||| ||||| ||||| | || | | |||||||||| ||| || ||| || |
Sbjct 1279451 TCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1279392
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||||||||| | || || || || |||||||| ||||| ||
Sbjct 1279391 CG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1279334
Query 41851 GAAA 41854
||||
Sbjct 1279333 GAAA 1279330
>seq1
Length=6530789
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| || || || || ||||| ||||| ||||||| |||||| ||||||||| |||
Sbjct 4516087 CGCATAGCCCCACGGTCCGGGCTCGCGTCCAAGCACTTCATCGACACGGGCGCCGGTGTC 4516028
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| ||||||||||||||||| | |||| | | ||||||||||||| |||
Sbjct 4516027 ATTGACGCCGACTACCGCGGCCAGGTCAAGGTGCTGCTCTTCAACCACGCCGA 4515975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303387447200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |