Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metarhizium_20robertsii_20[genbank_20GCA_5F000591435.1_202014-03-17] 367 sequences; 40,317,276 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq223 140 2e-28 seq1 98.7 7e-16 >seq223 Length=8226 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6154 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6095 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6094 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6060 >seq1 Length=5053378 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||| || | || ||||| |||||| ||||| |||||||||| Sbjct 1684577 TACCACCACGAAGTCGCAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCAG 1684518 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | || || || ||||| || || || |||||||||| || Sbjct 1684517 ACAGCGTTCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCGGGGG 1684458 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| ||| ||| ||| || ||||| | | || || || | Sbjct 1684457 GAATGCCTTCTTTATCCTGAATCTTTGATTTGACATTGTCAATCGTGTCCGAGGACTCGA 1684398 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || || || || ||||| || || ||||| || ||||| Sbjct 1684397 CTTCTAACGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1684349 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| || ||||||||||| || ||||| || || | || |||| || | || Sbjct 1684780 ATGCAGGGTGCTCTCCTTCTGGATATTATAGTCGCTGAGGGTGCGACCGTCTTCCAGCTG 1684721 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || || || ||||| || | ||| | |||||| ||||| ||| || Sbjct 1684720 CTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 1684661 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | ||| ||||| | | |||||| | ||| ||||| ||||| ||||| || || || Sbjct 1684660 TGACTTGACATTGTCAATAGTATCGCTGGATTCCACTTCCAATGTGATAGTCTTGCCAGT 1684601 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 ||| || || ||||| || ||||| Sbjct 1684600 CAAAGTCTTGACGAAGATTTGCAT 1684577 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| |||||| || || ||||||||||| || || ||||| || Sbjct 3941178 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 3941237 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || || || || || || || ||||| |||| ||| Sbjct 3941238 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGTTGGTCGGGGGG 3941297 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| || || | || || || | || || Sbjct 3941298 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 3941357 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || ||||| || ||||| | ||| || ||||| |||||||| || Sbjct 3941358 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 3941408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945701843977