Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23]
173 sequences; 38,835,037 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq22 154 3e-32
seq2 154 3e-32
seq1 96.9 7e-15
>seq22
Length=534521
Score = 154 bits (170), Expect = 3e-32
Identities = 447/683 (65%), Gaps = 15/683 (2%)
Strand=Plus/Plus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | | ||||| ||||| || || ||| || || || ||||| | | ||||||
Sbjct 116659 TACCAGTACTTTGGCTTCAAGACCCTCGAGCGCTCATACCTGCTCAAGCTCAACGGCAAG 116718
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
||||| || || ||||||||| | ||||| ||| ||||||| || ||| || |||
Sbjct 116719 ATCGTCGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCATCCACGGCGACGAC 116778
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TGACACATGCCA 248995
|| ||| | || | ||||| |||| | || || || | | | |||||||||
Sbjct 116779 ATTGAGCGTGTCATTGAGACTTACAACCTCAT--GTCAAGCAAGTACTTCACACATGCCT 116836
Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
| || || || |||||||| ||||| | | |||||| || ||||| ||| | |
Sbjct 116837 CTCCCACCCTGTTCAACGCTGGTACTCCCCAGGCTCAGCTTTCGTCCTGCTTCCTTGTCG 116896
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112
|||| | || || | |||||||| |||||||| || | |||| || | ||
Sbjct 116897 ACATGAAGGATGATAGCATTGACGGCATCTATGACACTCTCA---AGACCTGTGCCATGA 116953
Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172
| || || | || || || || ||||| | || | |||||| || | || || |
Sbjct 116954 TCTCCAAGATGGCTGGTGGTATTGGTCTGAACATCCACCGCATCCGTGCTACCGGCTCCT 117013
Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232
|||| || || || || | | || || || ||| | || || ||| |
Sbjct 117014 ACATTGCCGGCACCAACGGTACCTCCAACGGCATTGTTCCCATGCTGCGTGTCTTCAACA 117073
Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTAT 249288
||| ||||| | | || |||||| | ||| | | || || | |||||||| ||
Sbjct 117074 ACACTGCCAGATACGTCGACCAGGGC-GGCAACAAGAGACCTGGCGCTTTCGCCATTTAC 117132
Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348
| || |||||||| ||| | || |||||||| ||| | |||||| |||||||
Sbjct 117133 CTCGAGCCCTGGCACGCGGATGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAG 117192
Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408
||| || | || ||||| |||||| || ||| ||| | ||||| ||||||||
Sbjct 117193 GAGGAGATCCGTGCCCGTGATCTCTTCCTCGCCCTCTGGATTCCCGACCTGTTCATGAAG 117252
Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATC 249468
|| ||| || ||||||| ||||| || | | ||| ||| ||| | |||| |
Sbjct 117253 CGTGTCGAGAAGAACGGCGAGTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCC 117312
Query 249469 GATCTACACGGCGCCGACTTCGA 249491
||| | |||||| ||| |||||
Sbjct 117313 GATGTGTACGGCGACGAGTTCGA 117335
>seq2
Length=4043926
Score = 154 bits (170), Expect = 3e-32
Identities = 275/399 (69%), Gaps = 22/399 (6%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
||||| || |||| ||| |||| || ||||| || |||||||| || || ||||| |||
Sbjct 1918470 CTTCCCCACATGCTATTCTACGGCCCCCCCGGCACGGGCAAGACCTCGACAATCCTCGCG 1918411
Query 254061 CTGGCCC--GAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118
|| ||| || | || || || | || |||| | ||||||||||||||| ||||
Sbjct 1918410 CTTGCCAAGGAGCTCTACGGGCCG--GAGATGATGAAGGCGCGCGTGCTCGAGCTCAACG 1918353
Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGT 254178
| || ||||| || || | |||| ||||| ||| ||||| ||| | ||||
Sbjct 1918352 CCTCCGACGAGCGTGGCATCTCGATCGTGCGCGAAAAGGTCAAGGACTTCGCGCGGATGC 1918293
Query 254179 CGATTTC---------GTC--GTTCCAAC--CCGG-----CTGTCCGCCTTTCAAGCTCG 254220
| | | | | | | ||| |||| ||| ||||| |||||| ||
Sbjct 1918292 AGCTCACCAACCCGCCGCCAGGGTACAAGGACCGGTACCCCTGCCCGCCCTTCAAGATCA 1918233
Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280
| ||||| |||||||| |||| ||||||| ||||||||| ||| || ||||| ||||
Sbjct 1918232 TCATCCTCGACGAGGCCGACAGCATGACGCAGGACGCGCAGAGCGCGCTGCGCCGCACGA 1918173
Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340
||||||| || | | || || || ||||| | ||||||||||| || ||||
Sbjct 1918172 TGGAGACATACAGCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTCACGCGCATCA 1918113
Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||| ||||||||| || || ||| |||||| || ||||
Sbjct 1918112 TCGACCCGCTGGCGTCCCGCTGCAGCAAGTTCCGCTTCA 1918074
>seq1
Length=4328376
Score = 96.9 bits (106), Expect = 7e-15
Identities = 206/304 (68%), Gaps = 18/304 (6%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| | || || | || || || ||||| |||||||| || ||| |||| |||
Sbjct 146256 CTACCCCATCTACTACTCTATGGGCCGCCGGGAACCGGCAAGACATCCACCGTCCTCGCG 146197
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|| || || | | || | | ||||||| | || ||||||||||| |||||
Sbjct 146196 CTCGCTCGCCGGATTTATGGTGTCGAGAACATGCGGCAGATGGTGCTCGAGCTCAACGCC 146137
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT---CTCCA----- 254172
|| ||||| ||||| | ||||| || ||||| |||||||||| || ||||
Sbjct 146136 TCGGACGACCGCGGAATCGACGTGGTGCGCGAGCAGATCAAGACGTTTGCTTCCACCAAG 146077
Query 254173 -AGATGT---CGAT-TTCG--TCGTTCCAACCCGGCTGT---CCGCCTTTCAAGCTCGTG 254222
|||| | |||| || | | || |||||| || || | ||||||| |
Sbjct 146076 CAGATCTTCACGATGGGCGGAGCCTCCCGGCCCGGCGGTGTGGCGGGCTACAAGCTCATC 146017
Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282
||||| |||||||| ||| ||||||| | ||||||| ||||| ||||| | |||
Sbjct 146016 ATCCTCGACGAGGCCGACGCCATGACCAACACCGCGCAGATGGCCCTGCGCCGCATCATG 145957
Query 254283 GAGA 254286
||||
Sbjct 145956 GAGA 145953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073764019929664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |