Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq22 154 3e-32 seq2 154 3e-32 seq1 96.9 7e-15 >seq22 Length=534521 Score = 154 bits (170), Expect = 3e-32 Identities = 447/683 (65%), Gaps = 15/683 (2%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| || || ||| || || || ||||| | | |||||| Sbjct 116659 TACCAGTACTTTGGCTTCAAGACCCTCGAGCGCTCATACCTGCTCAAGCTCAACGGCAAG 116718 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||||| || || ||||||||| | ||||| ||| ||||||| || ||| || ||| Sbjct 116719 ATCGTCGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCATCCACGGCGACGAC 116778 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TGACACATGCCA 248995 || ||| | || | ||||| |||| | || || || | | | ||||||||| Sbjct 116779 ATTGAGCGTGTCATTGAGACTTACAACCTCAT--GTCAAGCAAGTACTTCACACATGCCT 116836 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | || || || |||||||| ||||| | | |||||| || ||||| ||| | | Sbjct 116837 CTCCCACCCTGTTCAACGCTGGTACTCCCCAGGCTCAGCTTTCGTCCTGCTTCCTTGTCG 116896 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112 |||| | || || | |||||||| |||||||| || | |||| || | || Sbjct 116897 ACATGAAGGATGATAGCATTGACGGCATCTATGACACTCTCA---AGACCTGTGCCATGA 116953 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || | || || || || ||||| | || | |||||| || | || || | Sbjct 116954 TCTCCAAGATGGCTGGTGGTATTGGTCTGAACATCCACCGCATCCGTGCTACCGGCTCCT 117013 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 |||| || || || || | | || || || ||| | || || ||| | Sbjct 117014 ACATTGCCGGCACCAACGGTACCTCCAACGGCATTGTTCCCATGCTGCGTGTCTTCAACA 117073 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTAT 249288 ||| ||||| | | || |||||| | ||| | | || || | |||||||| || Sbjct 117074 ACACTGCCAGATACGTCGACCAGGGC-GGCAACAAGAGACCTGGCGCTTTCGCCATTTAC 117132 Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348 | || |||||||| ||| | || |||||||| ||| | |||||| ||||||| Sbjct 117133 CTCGAGCCCTGGCACGCGGATGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAG 117192 Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408 ||| || | || ||||| |||||| || ||| ||| | ||||| |||||||| Sbjct 117193 GAGGAGATCCGTGCCCGTGATCTCTTCCTCGCCCTCTGGATTCCCGACCTGTTCATGAAG 117252 Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATC 249468 || ||| || ||||||| ||||| || | | ||| ||| ||| | |||| | Sbjct 117253 CGTGTCGAGAAGAACGGCGAGTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCC 117312 Query 249469 GATCTACACGGCGCCGACTTCGA 249491 ||| | |||||| ||| ||||| Sbjct 117313 GATGTGTACGGCGACGAGTTCGA 117335 >seq2 Length=4043926 Score = 154 bits (170), Expect = 3e-32 Identities = 275/399 (69%), Gaps = 22/399 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || ||||| || |||||||| || || ||||| ||| Sbjct 1918470 CTTCCCCACATGCTATTCTACGGCCCCCCCGGCACGGGCAAGACCTCGACAATCCTCGCG 1918411 Query 254061 CTGGCCC--GAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118 || ||| || | || || || | || |||| | ||||||||||||||| |||| Sbjct 1918410 CTTGCCAAGGAGCTCTACGGGCCG--GAGATGATGAAGGCGCGCGTGCTCGAGCTCAACG 1918353 Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGT 254178 | || ||||| || || | |||| ||||| ||| ||||| ||| | |||| Sbjct 1918352 CCTCCGACGAGCGTGGCATCTCGATCGTGCGCGAAAAGGTCAAGGACTTCGCGCGGATGC 1918293 Query 254179 CGATTTC---------GTC--GTTCCAAC--CCGG-----CTGTCCGCCTTTCAAGCTCG 254220 | | | | | | | ||| |||| ||| ||||| |||||| || Sbjct 1918292 AGCTCACCAACCCGCCGCCAGGGTACAAGGACCGGTACCCCTGCCCGCCCTTCAAGATCA 1918233 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | ||||| |||||||| |||| ||||||| ||||||||| ||| || ||||| |||| Sbjct 1918232 TCATCCTCGACGAGGCCGACAGCATGACGCAGGACGCGCAGAGCGCGCTGCGCCGCACGA 1918173 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 ||||||| || | | || || || ||||| | ||||||||||| || |||| Sbjct 1918172 TGGAGACATACAGCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTCACGCGCATCA 1918113 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| ||||||||| || || ||| |||||| || |||| Sbjct 1918112 TCGACCCGCTGGCGTCCCGCTGCAGCAAGTTCCGCTTCA 1918074 >seq1 Length=4328376 Score = 96.9 bits (106), Expect = 7e-15 Identities = 206/304 (68%), Gaps = 18/304 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| | || || | || || || ||||| |||||||| || ||| |||| ||| Sbjct 146256 CTACCCCATCTACTACTCTATGGGCCGCCGGGAACCGGCAAGACATCCACCGTCCTCGCG 146197 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || || | | || | | ||||||| | || ||||||||||| ||||| Sbjct 146196 CTCGCTCGCCGGATTTATGGTGTCGAGAACATGCGGCAGATGGTGCTCGAGCTCAACGCC 146137 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT---CTCCA----- 254172 || ||||| ||||| | ||||| || ||||| |||||||||| || |||| Sbjct 146136 TCGGACGACCGCGGAATCGACGTGGTGCGCGAGCAGATCAAGACGTTTGCTTCCACCAAG 146077 Query 254173 -AGATGT---CGAT-TTCG--TCGTTCCAACCCGGCTGT---CCGCCTTTCAAGCTCGTG 254222 |||| | |||| || | | || |||||| || || | ||||||| | Sbjct 146076 CAGATCTTCACGATGGGCGGAGCCTCCCGGCCCGGCGGTGTGGCGGGCTACAAGCTCATC 146017 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 ||||| |||||||| ||| ||||||| | ||||||| ||||| ||||| | ||| Sbjct 146016 ATCCTCGACGAGGCCGACGCCATGACCAACACCGCGCAGATGGCCCTGCGCCGCATCATG 145957 Query 254283 GAGA 254286 |||| Sbjct 145956 GAGA 145953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764019929664