Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 123 2e-23 seq9 100 2e-16 >seq25 Length=380168 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || | |||||||| || || | || Sbjct 211728 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTTGAGGTCGAGTCGTCC 211787 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || |||||||||||||| || |||||||| Sbjct 211788 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAG 211847 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||| ||| | || || |||||| Sbjct 211848 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTGTCTGACTACAAC 211907 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | || | || ||||||| ||| Sbjct 211908 ATCCAGAAGGAGTCTACTCTCCATCTCGTCCTCCGTCTGCGCGGTGGT 211955 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || || || |||| || ||||| ||| | | Sbjct 212184 ATGCAAATTTTTGTCAAGACTCTTACTGGCAAGACCATCACCCTGGAAGTTGAATCGTCG 212243 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || || ||||| Sbjct 212244 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 212303 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | || ||| |||||| | ||| |||||| Sbjct 212304 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTGAGCGACTACAAC 212363 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 212364 ATCCAGAAGGAGTCGAC 212380 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||||| || ||||| | || Sbjct 211956 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCTTCC 212015 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 212016 GACACCATCGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 212075 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| || ||| ||||||| | ||| |||||| Sbjct 212076 CAGCGCCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGAGCGACTACAAC 212135 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || | || ||||| |||| || ||| Sbjct 212136 ATCCAGAAGGAGTCAACCTTGCACCTGGTGTTGCGCCTGCGTGGTGGT 212183 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || || || | Sbjct 211500 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCG 211559 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||||||||| || |||||||| Sbjct 211560 GACACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAG 211619 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| | || ||||||| |||||| Sbjct 211620 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGAAGAACACTCTCCGACTACAAC 211679 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 211680 ATCCAGAAGGAGTCCAC 211696 >seq9 Length=1091098 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | || Sbjct 140572 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 140631 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 140632 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 140691 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| |||||| |||| || |||||| Sbjct 140692 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAC 140751 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || | || || || |||| || ||| Sbjct 140752 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTGAGACTGCGTGGTGGT 140799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727115029745