Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 129 1e-24 seq5 93.3 1e-13 seq3 86.0 1e-11 >seq25 Length=380168 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || ||||| || | ||| || || ||||| || ||||||| Sbjct 211727 TCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 211668 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||| || | || || || |||||||| || ||||| ||| || Sbjct 211667 GAGTGTTCTTCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGG 211608 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| || || || |||||||| || ||| || ||||| || || | || || || | Sbjct 211607 GATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGA 211549 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || ||||| ||||| || ||||| ||||||||||| |||||||| ||| Sbjct 211548 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGATG 211496 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || |||||||| | || || || ||||| || ||||| | Sbjct 211954 CCACCGCGCAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 211895 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | || || || || ||||| || ||||| ||| ||| Sbjct 211894 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGAGGG 211835 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| || ||| || ||||| || || | |||| ||| || || Sbjct 211834 ATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGACTCGAC 211776 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| ||||||| ||||||||||| ||||||||| Sbjct 211775 CTCAAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATT 211727 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| || ||||| || || || || |||||| Sbjct 212146 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAG 212087 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| || || ||| || || || || |||||||| || | ||||| Sbjct 212086 ATGAGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 212030 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || ||||| ||||| || || ||||||||| Sbjct 212029 TTATCGATGGTGTCGGAAGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTG 211970 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 211969 ACGAAGATCTGCAT 211956 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| || ||||| | || || || || ||| Sbjct 212374 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAG 212315 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| || || || ||||| || || | || ||||| Sbjct 212314 ATAAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 212255 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||| ||||| || ||||| ||||| || || ||||||||||| Sbjct 212254 TCAATGGTGTCCGACGATTCAACTTCCAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACA 212195 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 212194 AAAATTTGCAT 212184 >seq5 Length=2741173 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || || || ||||| || | || || || ||||||||| Sbjct 2268399 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 2268340 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || ||||| || || ||||||||||| || | || || || || Sbjct 2268339 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 2268280 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| ||| || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 2268279 ATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 2268221 >seq3 Length=3980562 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| || || || || | | |||| | |||||| || || ||| | || || | | Sbjct 2739286 CATCATCGATGCTGTCAAGATCGAACAGGAGTTCCTTACCGAGGCTCTGCCCTGCGCCCT 2739345 Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210 | | || ||||| | | |||||||| || || ||||| ||||| || || || || | Sbjct 2739346 GCTTGGCATGAACTCGAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCT 2739405 Query 269211 CACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 | || ||||| | ||||| || ||| | | | || ||||| | ||| ||||| Sbjct 2739406 CGTCGCTCTCGGCAACGAGAAGGTCTACCGTGCCACCAACCCCTTTGACTTCATGGAGAA 2739465 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTC 269329 || || || | || ||||| ||||||||||| ||||| ||| |||| || || | | | Sbjct 2739466 CATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGC 2739525 Query 269330 CTGGTGTAATG 269340 | ||||| ||| Sbjct 2739526 C-GGTGTCATG 2739535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651785222294