Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 129 6e-25 seq25 105 7e-18 seq9 100 3e-16 seq5 82.4 8e-11 >seq3 Length=3980562 Score = 129 bits (142), Expect = 6e-25 Identities = 339/511 (66%), Gaps = 25/511 (5%) Strand=Plus/Plus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA-GAGCGACACCGCCACGCTGGCCGA 52396 ||||| ||||| | ||||| ||||||||||| || || | | || | || | Sbjct 2739020 CGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCTCCGACCGGGAGT-CTACCTTCGCTCA 2739078 Query 52397 GCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCAT 52456 |||| | | ||||| || |||||||| | || || ||| ||| ||| |||| Sbjct 2739079 GCGCCTCATTGCCTTTGCTGCGGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 2739138 Query 52457 CTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATC 52516 ||| | | || | | ||| | ||||||||||| || ||| ||||||| | || || Sbjct 2739139 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTC 2739198 Query 52517 GCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---------ACTACAAGACGCG 52567 ||| ||||| || || ||||| |||||||| |||||| || ||||| || Sbjct 2739199 GCGTGACGAGGGCCTCCACACTGACTTTGCCTGCCTCCTGTTCTCCCACCTCAAGAACCG 2739258 Query 52568 CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTAT 52627 | | | | || | | ||| | || || ||| || || || || || Sbjct 2739259 CCCCAGCAAGAAGCTCG--TCG---AGGA----GATCATCATC---GATGCTGTCAAGAT 2739306 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 |||| ||||||| |||| | || ||||| || ||||| ||||||||| || | Sbjct 2739307 CGAACAGGAGTTCCTTACCGAGGCTCTGCCCTGCGCCCTGCTTGGCATGAACTCGAACCT 2739366 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-A 52746 |||| ||||||||||||| || || || || || | || ||||| || | | | Sbjct 2739367 CATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCTCTCGG-CAACGAGA 2739425 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 || || | || ||| || ||||| || ||| | ||||| || || | ||||||| Sbjct 2739426 AGGTCTACCGTGCCACCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGA 2739485 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||| ||||||||||| ||||||||||| Sbjct 2739486 CCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 2739516 >seq25 Length=380168 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||| || || || || || ||||| | | Sbjct 212377 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCA 212318 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| || ||||| || || || || ||||| ||| | || | || | Sbjct 212317 AAGATAAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 212259 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||| || || || | || | || || ||||| ||||| | Sbjct 212258 GTTG-TCAATGGTGTCCGACGATTCAACTTCCAGGGTGATGGTCTTGCCAGTAAGAGTCT 212200 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 212199 TGACAAAAATTTGCAT 212184 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||||| || ||||||||||||||| Sbjct 212182 CCACCACGCAGGCGCAACACCAGGTGCAAGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 212123 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || || | |||| || ||||| |||||||| || Sbjct 212122 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGA 212063 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 212062 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTATCGATGGTGTCGGAAGACTCCACC 212003 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || || |||||||| Sbjct 212002 TCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 211956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | |||||||| || ||||||||||| | Sbjct 211954 CCACCGCGCAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 211895 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || || | | |||| || ||||| || || ||||| Sbjct 211894 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGAGGG 211835 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||| |||| |||||| ||| Sbjct 211834 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCGACC 211775 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || || || |||||||| Sbjct 211774 TCAAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 211728 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | ||||||||| || || || | Sbjct 211693 GACTCCTTCTGGATGTTGTAGTCGGAGAGTGTTCTTCCGTCCTCGAGCTGCTTGCCAGCG 211634 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || ||||| ||||| || ||||| ||| || || | Sbjct 211633 AAGATGAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACG 211574 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||| | || | || || || ||||| || || Sbjct 211573 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTG 211514 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 211513 ACGAAGATCTGCATG 211499 >seq9 Length=1091098 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||| || || |||| Sbjct 140765 GACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 140706 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 140705 AAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 140646 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||||||||||| || | || || || ||||| || || Sbjct 140645 TTGTCGATAGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTC 140586 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 140585 ACGAAGATCTGCATG 140571 >seq5 Length=2741173 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || ||| || |||||| || || || |||| ||| Sbjct 2268401 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 2268342 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| |||||||| || || || || || || ||| || || | ||||| Sbjct 2268341 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 2268282 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 | | |||||||| |||||||||||| | || | || || || ||||| || || || Sbjct 2268281 -CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 2268223 Query 138604 AA 138605 || Sbjct 2268222 AA 2268221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261326832560