Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 176 5e-39 seq25 127 2e-24 seq9 127 2e-24 seq5 87.8 2e-12 >seq3 Length=3980562 Score = 176 bits (194), Expect = 5e-39 Identities = 345/502 (69%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || ||| ||| ||| | Sbjct 2739522 TTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 2739463 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | |||| ||| | |||||| || ||||| Sbjct 2739462 TCCATGAAGTCAAAGGGGTTGGTGGCACGGTAGACCTTCTCGTTGCCGAG-AG--CGACG 2739406 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 || || | |||||| |||||||||||||| ||| |||| | |||| | || | || || Sbjct 2739405 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCG-AGTTCATGCCAAG 2739347 Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||| ||||| || ||||| || || || ||||| ||| || ||| ||| Sbjct 2739346 CAGGGCGCAG-GGCAGAGCCTCGGTAAGGAACTCCTGTTCGATCTTGACAGCATCGATGA 2739288 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| ||| ||| || | ||| || || | | | || ||||| | ||| | Sbjct 2739287 TGATCTCCTCGACGAGCTTCTTGCTGGGGCGGTTCTTGAGGTGGGAGAACAGGAGGCAGG 2739228 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 ||||||| || | ||||||||| | || ||||| |||||| ||| || | ||||| Sbjct 2739227 CAAAGTCAGTGTGGAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGG 2739168 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||||||||| || |||||||| || |||| |||||| || ||||||| | Sbjct 2739167 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 2739108 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 ||||||| || || || || | ||||||| |||| || | || | || ||||| Sbjct 2739107 CCTCGACCGCAGCAAAGGCAATGAGGCGCTGAGCGAAGGTAGACTCCCGGTCGGAGATCC 2739048 Query 133079 AGCGCAGCGCCCATTCGGCCTT 133100 | ||| ||||| |||||||| Sbjct 2739047 ACTTCAGAGCCCAGTCGGCCTT 2739026 Score = 167 bits (184), Expect = 2e-36 Identities = 204/278 (73%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || Sbjct 2738894 ACGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 2738835 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284 |||||||| ||||| ||||||||| | ||| || || ||| ||||||||||| Sbjct 2738834 AAGCCGTAGAAGCAGCGCGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGG 2738775 Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 || ||||||||||||||||| ||||||||| |||||||| | |||| |||||| | Sbjct 2738774 TTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTGCGAGATGAAGTAC 2738715 Query 133345 CGCTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCC 133401 ||| | |||| || | | ||||||| | |||||||| || || | |||| Sbjct 2738714 TTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCC 2738655 Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| | ||||| || || |||||||| || |||||||| Sbjct 2738654 TCGGCAGTCCAGAAAGATGCCTCGGCCTTCTTGTACAT 2738617 >seq25 Length=380168 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| | || || ||| | || Sbjct 211956 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCTTCC 212015 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| | ||||| Sbjct 212016 GACACCATCGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 212075 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| ||| |||| || | |||||||| | |||||||||| Sbjct 212076 CAGCGCCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGAGCGACTACAAC 212135 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || |||| ||||| |||| Sbjct 212136 ATCCAGAAGGAGTCAACCTTGCACCTGGTGTTGCG 212170 Score = 118 bits (130), Expect = 1e-21 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| | || |||||| || | Sbjct 211500 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCG 211559 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| || || |||| | Sbjct 211560 GACACCATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATC 211617 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || |||| | || ||| |||||||| Sbjct 211618 AGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGAAGAACACTCTCCGACTACA 211677 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 211678 ACATCCAGAAGGA 211690 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| ||||||||| | || || || | | Sbjct 212184 ATGCAAATTTTTGTCAAGACTCTTACTGGCAAGACCATCACCCTGGAAGTTGAATCGTCG 212243 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 212244 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 212302 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | ||||| || | ||||||||| Sbjct 212303 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTGAGCGACTACAA 212362 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| |||| |||| || ||| || | || || Sbjct 212363 CATCCAGAAGGAGTCGACATTGCACCTGGTCCTCCGTCTGCGTGGTGG 212410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || ||||| ||||| || | || |||||| | | Sbjct 211727 AATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTTGAGGTCGAGTCGTC 211786 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | | | | |||| | |||| || |||| ||||| ||||| || || |||| Sbjct 211787 CGATACCATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGAT 211844 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| ||||| || || | || ||| | |||||| Sbjct 211845 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTGTCTGACTAC 211904 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || ||| | || || ||| || | || || Sbjct 211905 AACATCCAGAAGGAGTCTACTCTCCATCTCGTCCTCCGTCTGCGCGGTGG 211954 >seq9 Length=1091098 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| |||| || ||| | || Sbjct 140572 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 140631 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 140632 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 140690 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 140691 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 140750 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| |||| || || | |||||| Sbjct 140751 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTG 140784 >seq5 Length=2741173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| | || || ||| | |||||| | | Sbjct 2268221 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATC 2268280 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || ||||| || ||| | ||||| ||||| || Sbjct 2268281 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTG 2268340 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || || || |||||||||||||| ||| Sbjct 2268341 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACTCTGTCTGACTACAACATCCAGAAG 2268400 Query 38433 G 38433 | Sbjct 2268401 G 2268401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171718376320