Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq22 239 6e-58 seq4 109 7e-19 seq3 87.8 2e-12 >seq22 Length=534521 Score = 239 bits (264), Expect = 6e-58 Identities = 1122/1750 (64%), Gaps = 55/1750 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || || |||||||| ||||||||||| || | ||||| | | ||||| | | Sbjct 118454 CGAAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGTGAAGTGCATGCTGGTG 118395 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGA 110480 | |||| ||| || || | |||| || ||||| | || |||| | ||||| | Sbjct 118394 ATCTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGAGACTGGGACT--GATCAATAA 118337 Query 110481 A-GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACT 110536 | || || | || | || ||||| | | ||| || ||| | || ||||| || Sbjct 118336 AAGCACCGCGGTCG-GCAGCCATTTGCACGACTG---TCCTCTGAGAGATCTCCCAGACG 118281 Query 110537 GTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCC 110596 || |||||| ||||| ||| | ||||| | | ||| ||||| | ||||| ||| Sbjct 118280 GTCTTGTAGAGAGCCTTGACATCGGCGGGGATGTTGGGGATGTTCTGAACAGAACCGCCC 118221 Query 110597 GCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTG 110656 | | ||| | | |||||| | ||||||||||| || | ||||| ||| Sbjct 118220 TCGGCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCGACAAGGTCCTTG 118161 Query 110657 ACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 | ||| |||||| | || ||||||||||| | | | |||||||||| Sbjct 118160 AGGAGCCAAGGGTTGACGACCTGGAAGTCACCTGCGAGCACACGACGCGAGTAGATGTTT 118101 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 110776 | ||||| || |||||||| || || || || | || || | ||| ||| || ||| Sbjct 118100 GAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCGAGAATCTGGGAGGTACTGGCAGTAGGC 118041 Query 110777 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || || || | || | |||||| || | ||| | ||||||||| | |||||||| Sbjct 118040 ATGGGGGCGACCAGCAAACTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTGAGGCTG 117981 Query 110837 TCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 ||||||| || || | | || | || |||| ||||||| |||| || | || | Sbjct 117980 GCCCAGTCCCAGA-GATCCGTGGGGGTGACATTCC-ACATGTCGTACTGGAGGATACCCT 117923 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC-CAATTCACAG 110953 | || | ||||| ||||| | || || | || || | | || || | || || Sbjct 117922 GCGAGACAGGAGAGCCCTCGTAAGTGGAGTAAGGGCCATGCTCCTTGGCGCACTCCATAG 117863 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 || || | ||||| || ||||| || ||||| | || | || | || Sbjct 117862 AG-GCAGTAAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTGTCTAGCC 117804 Query 111014 TCATCTGAATC-AAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACAC 111071 || || || ||| || | ||| || | || || |||| |||||||| ||||||| Sbjct 117803 TCGGGAGACTCGAAAGGCAT-GCG-CAGAGCAAGGAAGGCATCGGCGAGACCCTGAACAC 117746 Query 111072 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAAT 111131 | | ||| || || | ||| ||||| || || || || || ||||| || | | Sbjct 117745 CGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGCACGGGGTAGTAGT 117686 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT---GTGATTTCATGAAGTT 111188 | | ||||||| ||| || || | |||||| || | || || || | Sbjct 117685 TGATATCAATGATCTTGTTCAGGTT---GCGAACAATGACACGGGTAACGTCGTGGAGCT 117629 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACAT---ACTTTGGAAGGGCGATTGATG 111245 | | | || | | | ||| | | | || ||| || || || | || | Sbjct 117628 TCTGGAAGTCGTAGACG---GCCTCGTTGTAGTCAACGAACTGGGGCAGAGCCAGGGAAG 117572 Query 111246 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGT 111305 |||||||||| ||||| |||||| | | |||||| | || || || || | || Sbjct 117571 CCAAATTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATCTCAGTGCAGAGGT 117512 Query 111306 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGT 111365 |||| || || || ||||| ||||| ||||| ||||| |||| |||||||||| Sbjct 117511 TGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGT 117452 Query 111366 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCG 111424 |||||||| | || | || ||||| ||||| | | ||| || || | ||| | | || Sbjct 117451 AGAGCATGAAAGGGTTACCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCT 117392 Query 111425 GCGGCTGGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC 111483 | | || | | || || | || ||||| ||||||||||| ||| || || || Sbjct 117391 GGGCCTTGATCTTCTGACGAC--CACGACCCTCGGCCTCGTACTTCTCGTACAGAGCCTC 117334 Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543 ||||| || || | | |||| ||| || || || || ||||| | |||| ||| Sbjct 117333 GAACTCGTCGCCGTACACATCGGCGAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA 117274 Query 111544 TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 111603 | || | ||| || ||||||||||| ||||| |||||||| |||| ||||| Sbjct 117273 CTCGCCGTTCTTCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGGGCGAGGAAGAG 117214 Query 111604 ATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 ||| | ||| || | || || | || ||||| || | || |||||||| | || Sbjct 117213 ATCACGGGCACGGATC-TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGA 117155 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCA 111715 |||||||||||| ||||| || || | |||| || || ||| | | ||||| Sbjct 117154 CATCCGCGTGCCAGGGCTCGAGGTAAATGGCGAAAGCGCCAGGTCTCTTGTTGCCGCCCT 117095 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | | || | || | || ||| ||| || || || ||||| |||| ||| || | Sbjct 117094 GGTCGA----CGTATCTGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTG 117039 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 || ||| || || || ||| || | || | | ||||||| || Sbjct 117038 GAGGTACCGTTGGTGCCGGCAATGTAGGAGCCGGTAGCACGGATGCGGTGGATGTTCAGA 116979 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 |||||||| |||||| ||| ||||| ||||| | | ||||| ||||||| ||| Sbjct 116978 CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCATAGATGCCG 116919 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || ||||| || ||| ||||||||| || | ||| | || ||| Sbjct 116918 TCAATGCTATCATCCTTCATGTCGACAAGGAAGCAGGACGAAAGCTGAGCCTGGGGAGTA 116859 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGT 112013 ||||| ||||| ||||| || | || || |||| ||| ||| ||||| || || Sbjct 116858 CCAGCGTTGAACAGGGTGGGAGAGGCATGTGTGAAG-TAC-TTGCTTGACATGAGGTTGT 116801 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | ||||| | |||| |||||||| || ||||||||||||| | || ||||||| || Sbjct 116800 AAGTCTCAATGACACGCTCAATGTCGTCGCCGTGGATGCCGACAGACACACGCATGATCA 116741 Query 112074 TGTACTGTGG 112083 ||| ||| || Sbjct 116740 TGTGCTGGGG 116731 >seq4 Length=3265764 Score = 109 bits (120), Expect = 7e-19 Identities = 224/326 (69%), Gaps = 14/326 (4%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 |||||| | || |||||||| || ||||||| ||| || || | | | ||| || | Sbjct 589273 CTTGCCAATAGCGTCAATCTCGTCGATGAAGATAATGCACGGCGCACTCTTGCGCGCATT 589214 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | ||||| || || || | |||||| ||||| ||||||||||| || || | | Sbjct 589213 GGCGAAGAGGTCACGCACTCGGGAGGCACCGACACCGACAAACATCTCTACGAACTCGGA 589154 Query 11740 G--GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | || || | ||| | ||| ||||| || ||||| ||| | || ||| || | Sbjct 589153 GCCGCTGA-CGCTGAA-GAAGGGGACGCCAGACTCACCGGCGGTAGCCTTGGCAAGCATA 589096 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---A 11854 ||||| || ||||| || || ||||||| |||||| |||||||||||||| || | Sbjct 589095 GTCTTACCAGTACCGGGTGGTCCAGCGAGAATGGCGCCGCGGGGGATCTTGGCGCCCAGA 589036 Query 11855 CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCT--T 11912 | |||| | ||||||| | ||||||||| |||| ||| || | || || | Sbjct 589035 CGGACAAACT---TCTCGGGCTTCTTGAGAAAGCTGACAAACTC--CATGATCTCCTGCT 588981 Query 11913 TGGCCGCGTCAATCCCCTCAACATCA 11938 ||||| | || || || |||||||| Sbjct 588980 TGGCCTCATCCATACCGGCAACATCA 588955 >seq3 Length=3980562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||| ||||| || || || || || || || |||||| || || Sbjct 2739229 GGCAAAGTCAGTGTGGAGGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCC 2739170 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 2739169 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 2739110 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| || ||||| |||| ||||| | ||||||| Sbjct 2739109 ACCCTCGACCGCAGCAAAGGCAATGAGGCGCTGAGCGAAGG 2739069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030641880800