Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microdochium_20bolleyi_20[genbank_20GCA_5F001566295.1_202016-02-23] 173 sequences; 38,835,037 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=4043926 Score = 118 bits (130), Expect = 1e-21 Identities = 273/400 (68%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||||| ||| | ||||||| || || ||||||||| || || || Sbjct 1046186 ACGTAGAATTGCGCAAACA-TGTGGCATGGCGGCAGCGCCATCTTCTTCAGGTCTGCAGG 1046244 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||||||||| ||| | ||||| | ||| | ||||| || | ||| | ||| Sbjct 1046245 GTTCCACGCGCTCATGATGATCCGGCGGTCGTACGGGTTGTTTTTGAGCTTGTGCACCAC 1046304 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | | |||||||| | || || || | || |||| ||| || | | ||| |||| Sbjct 1046305 CTCCGCGAGCTGGTCGACGCCTTGCCCTGTGTAATCCGTCTTGGCGTCGAC-ATATTCCG 1046363 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 ||||||| || | |||||||||||| || || ||||||| |||||| ||| || | || Sbjct 1046364 CCCCAAAATGCCGCCACTGGAACCCATACACAGGGCCCAGGTCGCCGACCT--CGCGGTG 1046421 Query 6966 GGA-ACCCCCGC-TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || | ||| | |||| || || || || ||||||| | ||||||||||| || || Sbjct 1046422 CGACAGTCCCACACTGTCGAGGAACTCGCGGGACCCGTTGCCATCCCAGATCTTGACGCC 1046481 Query 7024 CCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTC-ACGAACCACAGCAGCTCCTCGA 7082 | ||||| | || | || || ||||| |||||||| || ||||| ||| Sbjct 1046482 CGCTTCGGAGAGGGGCAAGGAGGAGGT-GCAGCCCTCGACGAACCAGAGGAGCTCGGCGA 1046540 Query 7083 CCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 | ||| | ||| | | || || || ||||| || ||||| Sbjct 1046541 CGACGGCTTTCAGGAAGACGCGCTTTGTCGTGAGGAGCGG 1046580 Score = 118 bits (130), Expect = 1e-21 Identities = 273/400 (68%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || ||||| || || || | | ||| | ||| |||| ||||| || |||||| Sbjct 1046580 CCGCTCCTCACGACAAAGCGCGTCTTCCTGAAAGCCGTCGTCGCCGAGCTCCTCTGGTTC 1046521 Query 34283 GT-GAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGC 34341 || ||||| || || | || | ||||| ||| || ||||||||||| | Sbjct 1046520 GTCGAGGGCTGC-ACCTCCTCCTTGCCCCTCTCCGAAGCGGGCGTCAAGATCTGGGATGG 1046462 Query 34342 TCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGT-TCCCATCTCGGGAGGAGGGCGAC 34399 ||||||| || || || || |||| | ||| | || || | || ||| |||||| Sbjct 1046461 CAACGGGTCCCGCGAGTTCCTCGACAGTGTGGGACTGTCGCACCGCG--AGGTCGGCGAC 1046404 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 ||||||| || || |||||||||||| | || ||||||||||| ||| | | || || Sbjct 1046403 CTGGGCCCTGTGTATGGGTTCCAGTGGCGGCATTTTGGGGCGGAATAT-GTCGACGCCAA 1046345 Query 34460 G-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518 | |||| || | || || || | |||||||| | | ||| | ||| | || Sbjct 1046344 GACGGATTACACAGGGCAAGGCGTCGACCAGCTCGCGGAGGTGGTGCACAAGCTCAAAAA 1046285 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||||| | ||| | ||||| | ||| ||||||||||||| || || ||| Sbjct 1046284 CAACCCGTACGACCGCCGGATCATCATGAGCGCGTGGAACCCTGCAGACCTGAAGAAGAT 1046225 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617 |||||| || || ||||||| | ||| ||||||||||| Sbjct 1046224 GGCGCTGCCGCCATGCCACA-TGTTTGCGCAATTCTACGT 1046186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261430632560