Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 107 4e-18 seq117 98.7 2e-15 >seq4 Length=852194 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 319451 GTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 319510 ||||||| ||| |||| ||||| || | || ||||| ||||||||||| || | Sbjct 354523 GTTCGTAGTGGTAAATATCTGTGCATACCTCATCAAGGAATCCGGAGTCGTGGCTGACGA 354464 Query 319511 TCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACA 319570 ||| | | | || || | || |||||||||| ||||| |||| || | | Sbjct 354463 TCAAACTAGTGATCTCGGTATGTTTTTTCAGGTATTCTTGTAACCATTTCACATTTGCAA 354404 Query 319571 CAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCAC 319630 || |||||||||||||| ||||| ||||| || | | || |||| |||||| |||| Sbjct 354403 CATCGAGATGGTTGGTCGGTTCGTCCAGAAGAAGCACGTCGGCCTTCATGAGCATAGCAC 354344 Query 319631 GTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | ||||| || || ||||| ||||| || ||||| || Sbjct 354343 GAGCAAGGGCAAGCTTCATCTTCCAACCACCGGACAG 354307 >seq117 Length=965375 Score = 98.7 bits (108), Expect = 2e-15 Identities = 175/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || ||||| || | || || ||||| ||| | || || | ||| | | Sbjct 188145 ATCATCACTGAAGCTGTCGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCC 188086 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 ||| | |||||||| | | |||||| | ||||| ||||| || || || || | | Sbjct 188085 CTTCTCGGCATGAATTCCAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTC 188026 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTG-TACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | ||||| ||||| || || |||| |||||||| | ||||| || | || ||||| Sbjct 188025 CTGGTTGCGCTTGGCAAC-AGCAAGTACTACAACTCCACCAACCCATTCGACTTCATGGA 187967 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 ||| || || || || |||||||||||||| ||||| || | ||||| |||| Sbjct 187966 CAACATCTCCCTGGCTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAGAA 187907 Query 230625 GCCTGGTGTGATG 230637 | ||||||| ||| Sbjct 187906 GGCTGGTGTCATG 187894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820110182810