Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq219 183 4e-41 >seq219 Length=270999 Score = 183 bits (202), Expect = 4e-41 Identities = 597/914 (65%), Gaps = 24/914 (3%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||||||||| || | |||| ||| ||||| |||| ||| || | | | | Sbjct 154186 TCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTC 154127 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 54069 || || |||| | ||| || || |||||||| ||||| || |||||||||| || ||| Sbjct 154126 CAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAA 154067 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT---AAGATCGAGGAACGC 54126 || || | | ||| ||||| ||||| || ||||| ||||| | ||| | Sbjct 154066 -AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTTTTTGCGGAGATCCAAGAATTC 154011 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | || ||||| ||||| ||||||| ||| || | | | | || ||||| |||||||| Sbjct 154010 GAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCC 153951 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 |||||||| | |||||| || || || || | || | | ||| || | || ||||| Sbjct 153950 ACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATT 153891 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-A 54305 || | || ||||| |||| || || || ||||||| || | | | | | Sbjct 153890 AGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTGA 153832 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 |||| || || ||||| | || || || | ||||| || || ||||||||||| | Sbjct 153831 GACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATAC 153772 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 54423 | || || ||||| | |||| | | || ||||| | || | ||| | || Sbjct 153771 CTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCA---GCTGA-GCCTGG 153716 Query 54424 --AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||| || ||||| || | || || || || || ||||| | || | ||| | | Sbjct 153715 GGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAG 153656 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCA 54539 || || ||||| || || || |||| | ||| || ||||| || || || |||| Sbjct 153655 TTATATGTCTCAATGGCCCTTTCAATAT--CGTTGCCGTGTATTCCAACAGCAACCCGCA 153598 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 | | ||||||||| || | || | | ||| || || |||| ||| || | Sbjct 153597 TCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGCT 153538 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 | | ||| || ||||| || | ||||| ||| || || ||||| | || | |||| Sbjct 153537 CAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAGT 153478 Query 54660 TGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAA 54718 | || | ||| || ||| |||||| | ||| | ||| ||||| ||||| | Sbjct 153477 TAAGCTCATCGGCATGTTTCATAACTA-TTTCATATGTCTCCTTAGAAATCATCGGTGCT 153419 Query 54719 TGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGt 54778 |||| ||| || || |||||||||| | | | || || ||| | || | Sbjct 153418 GGTTTATTATTCTTTGGGTTGACATAGTAATAGAGGTCTGAGATGACTAGAGAGAACTGC 153359 Query 54779 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || |||| ||||| || || ||||| ||||| | ||| || ||||| |||||||| Sbjct 153358 TTCTTGGTTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAATCT 153299 Query 54839 GGATGTTGTGTAGT 54852 || ||| |||||| Sbjct 153298 GGGTGTGTTGTAGT 153285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719470023760