Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq117 156 4e-33 seq89 127 2e-24 seq91 123 3e-23 seq238 116 4e-21 >seq117 Length=965375 Score = 156 bits (172), Expect = 4e-33 Identities = 206/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||| | ||| || Sbjct 188815 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACAGCTGAGGAAATCGACTTG 188756 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| ||||||| | ||| ||||||| ||||||| | |||||| Sbjct 188755 TCCAAAGACCTTCACGACTGGCACAATCGCCTGAACGATGACGAGCGTTACTTCATCTCC 188696 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||| || ||||| || ||||| || || || ||| Sbjct 188695 CACGTCCTCGCTTTCTTCGCCGCTTCCGATGGGATCGTGAATGAGAACCTTGTGGAACGT 188636 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | ||||| ||| | | || ||||| |||||||| || || |||||| || Sbjct 188635 TTTAGTGGCGAGGTCCAGATTCCTGAAGCGCGTTGCTTCTATGGTTTCCAGATCATGATC 188576 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | ||| || ||||||||||| ||| Sbjct 188575 GAGAACATCCACTCTGAGACGTACTCTCTGCTCATCGACACCTAC 188531 >seq89 Length=200026 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| || |||||| |||| || || | | ||||| | Sbjct 23590 TCGTCAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCG 23531 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| ||| || | || || ||||| || ||| |||||||||| || | | Sbjct 23530 ACAATGTCAAGACAAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGA 23471 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || |||| |||||||| |||||||||||| ||||||| Sbjct 23470 TCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 23411 Query 40880 AGGCCACGCTGCATCTAGTGTTGCG 40904 || |||| || ||||| || ||||| Sbjct 23410 AGTCCACCCTCCATCTCGTCTTGCG 23386 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || || ||||| |||| |||||| || || Sbjct 23372 ATGCAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCC 23313 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| ||| |||| || || ||||| || ||| | ||||| Sbjct 23312 GACACCATCGACAACGTT-AAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCA 23254 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || ||||| || || | || ||||| |||||||| Sbjct 23253 GCAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAA 23194 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || || || || Sbjct 23193 TATCCAAAAGGAATCTACCCTTCACCTTGT 23164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| | || || || || |||||| | | | |||| | ||| Sbjct 23869 ACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTT-AAGAC 23811 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| |||| ||||| || ||||| || | || ||||| || | |||| || ||||| Sbjct 23810 AAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAA 23751 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 |||||||| |||| || |||||| ||||||||| ||||||||||| Sbjct 23750 GCAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGA 23703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || ||||| || |||||||| |||| || ||| | | Sbjct 23145 AATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTC 23086 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | |||| | ||| ||| || | ||||| || || || || | || | Sbjct 23085 CGATACTATTGATAACG-TGAAGACAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATC 23027 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||| | |||||| || ||||| || || | || || || ||||||| Sbjct 23026 AGCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACA 22967 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| ||| ||| || || || || Sbjct 22966 ACATCCAGAAAGAGAGCACCCTTCACCTCGT 22936 >seq91 Length=644249 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || || || ||| |||||||||| | | ||||| | | Sbjct 240079 TTCGTGAAGACCCTGACGGGTAAGACTATTACCCTCGACGTCGAGTCGAGCGACACCATC 240138 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| ||| || | ||||| |||||||||||| |||||||||| || || Sbjct 240139 GACAACG-TCAAGACAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCT 240197 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || || || ||||| || || | || || || | |||||||||||||||||| Sbjct 240198 TATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTGAGCGACTACAACATCCAGAA 240257 Query 40878 GG 40879 || Sbjct 240258 GG 240259 >seq238 Length=427615 Score = 116 bits (128), Expect = 4e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||||||||| ||||| || Sbjct 49971 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAG 50030 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| |||||||| |||||||||||||||||||||| | || ||||| || ||| Sbjct 50031 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTGCACCTCGTG 50087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217351651120