Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq91 114 1e-20 seq89 113 4e-20 seq238 98.7 9e-16 >seq91 Length=644249 Score = 114 bits (126), Expect = 1e-20 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||||||| ||| || |||||||||||| || ||||| |||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTT 118668 ||||||||||| || || || ||||||||||||| ||| | | ||||| || || | | Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGA--TCTTTGTCTTGACGTTGT 240140 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| |||||| | |||||| |||| ||| | || || || ||||| || || || | Sbjct 240139 CGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGA 240080 Query 118729 A 118729 | Sbjct 240079 A 240079 >seq89 Length=200026 Score = 113 bits (124), Expect = 4e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||| || || || || ||||| ||| | || || ||||| Sbjct 23685 ACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCC 23744 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | |||||||||||||||||| ||||| ||||||||| | Sbjct 23745 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGA 23804 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | |||| |||||| | | ||| ||||| | || | || ||| Sbjct 23805 ATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTTG 23864 Query 118710 CCGGTCA 118716 || |||| Sbjct 23865 CCAGTCA 23871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | |||| || ||||| || ||||||||||| ||| Sbjct 23372 TACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 23431 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||| ||||| || |||||| |||| | ||||||||| || || | Sbjct 23432 ACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGG 23491 Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | || |||||||| | ||| | | ||||| || || | |||| ||||| | ||| Sbjct 23492 GAATACCCTCCTTATCCTGGA--TCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTC 23549 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 ||||||| ||| | || ||||| || || || || || Sbjct 23550 AACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 |||||| || |||||||| || || ||| || |||||| ||||| ||||| ||| | Sbjct 22953 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAA 23012 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACC 118664 ||||||||||||||||| ||||| || || ||||||| ||| | | ||||| || || Sbjct 23013 AATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGA--TCTTTGTCTTCACG 23070 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || | || || | || ||||||| || | || || || || || || || Sbjct 23071 TTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTC 23130 Query 118725 ACAAAAATCTGCAT 118738 || || |||||||| Sbjct 23131 ACGAAGATCTGCAT 23144 >seq238 Length=427615 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | |||||||| || || |||||||| ||| | ||||| ||||| Sbjct 50087 CACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTC 50028 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||||| || || ||| |||| || |||||||| |||||||| |||||||||||||||| Sbjct 50027 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTG 49969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828882542604