Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq89 118 7e-22 seq238 98.7 6e-16 seq91 91.5 1e-13 >seq89 Length=200026 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || |||| || || ||||| | || || |||||||| ||||||||||| || Sbjct 22917 TCCACCACGGAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGA 22976 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | |||||| || ||||||||||| |||||||| || || Sbjct 22977 CAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGG 23036 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| |||||| ||| | | | || | ||||| ||||| || Sbjct 23037 AATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTAC 23096 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 23097 CTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCAT 23144 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| ||| || || || |||||||| || Sbjct 23145 TCCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGA 23204 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| |||| | || || | |||||| || ||||| || || || |||||||| ||| Sbjct 23205 CAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGG 23264 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || |||||| ||| | | | | || | |||| |||||||| Sbjct 23265 AATTCCCTCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGAC 23324 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || || ||||||||||||||||| Sbjct 23325 TTCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || |||| ||| | |||| ||| ||||| || ||||||||||| Sbjct 23667 CCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAG 23726 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| || || || | |||||||| ||| || Sbjct 23727 AGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 23786 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||| | | | | || | |||| || || || Sbjct 23787 ATGCCTTCCTTGTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACC 23846 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 |||| |||||||| ||||| || Sbjct 23847 TCCAGAGTGATGGTCTTGCCAGT 23869 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| |||| || | |||||| || ||||| Sbjct 23410 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAG 23469 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| ||| | | |||||| || |||||| ||| | || | Sbjct 23470 ATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTTGTCTTGACATTG 23529 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | || || || || | ||||| || ||||| ||||| || || || Sbjct 23530 TCGATAGTGTCGCTAGACTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 >seq238 Length=427615 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | |||| || ||||| |||||||||||||| Sbjct 50104 CCACCACGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 50045 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 50044 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 49985 Query 34283 ACGCTCTCCTTGTCGGC 34299 | || ||||||||| || Sbjct 49984 ATGCCCTCCTTGTCTGC 49968 >seq91 Length=644249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||| ||| |||| | || || | |||||| || || || || Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| |||||| ||| | | | | Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| |||| |||||||| | || || || || || || || || ||||| ||| Sbjct 240137 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAAG 240078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070869954720