Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq219 210 2e-49 seq117 158 1e-33 seq89 98.7 9e-16 seq91 93.3 4e-14 >seq219 Length=270999 Score = 210 bits (232), Expect = 2e-49 Identities = 485/728 (67%), Gaps = 2/728 (0%) Strand=Plus/Minus Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGC 23308 |||||| ||| | |||||||| ||| |||| || ||| || |||||||| || | | Sbjct 154203 ACTTTTCGTAGAGAGCGTCAAACTCGTCACCATAGACA-TCAGCCAGGCCAGGTGCCTCA 154145 Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368 |||| || | || |||| || | ||||| || ||||||| ||||| || Sbjct 154144 TTCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGG 154085 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 |||| ||||||||||| || || || || | |||||||| || || ||| || Sbjct 154084 GTCCAAAGAGCGTAGAAAAGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGG 154025 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | |||||| || || || || || || ||||| || || ||||| | ||||| || ||| Sbjct 154024 AGATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCC 153965 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 || | ||| || || |||||||| ||||| | || || |||||| | || | ||||| Sbjct 153964 GGCCGCTTGTTTCCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATA 153905 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || |||| || || || | |||| || || | || || | || || | Sbjct 153904 GGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATT 153845 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 ||| |||| || ||| || || || | | || || ||||||||||| |||| Sbjct 153844 CGGTGGACGTTGAGACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAG 153785 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728 || || ||||| || |||||||| || || | | |||||| |||||| || | || Sbjct 153784 GTATCATAGATACCTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCAGC 153725 Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788 || || | ||| || |||| |||||| ||||| ||| || |||||||| | Sbjct 153724 TGAGCCTGGGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGA 153665 Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| | || || || || ||||| ||||| || | |||||||| || | || Sbjct 153664 GACATCAAGTTATATGTCTCAATGGCCCTTTCAATATCGTTGCCGTGTATTCCAACAGCA 153605 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || ||||||| ||||| || || | ||| || || || || | ||| ||| Sbjct 153604 ACCCGCATCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTAT 153545 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 ||||| | | || || || || || | | |||||||| || ||||||| ||| || Sbjct 153544 GAACGCTCAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATT 153485 Query 23969 GCCGAATT 23976 || || || Sbjct 153484 GCGGAGTT 153477 >seq117 Length=965375 Score = 158 bits (174), Expect = 1e-33 Identities = 319/466 (68%), Gaps = 18/466 (4%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| ||||| || | || |||| |||||||| || ||||| || ||||| || || Sbjct 188363 CCACCTTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGAT 188304 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 |||||| | || || ||| ||||||| || ||| ||||||| || || || || || Sbjct 188303 CCTTTGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCA 188244 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| |||| || ||||| || ||||| || || || || || ||||| ||| ||||| Sbjct 188243 ACGAGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTTCTCTC 188184 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTG-----GACATTATCACCGAGGCGGT 58192 | | |||| || ||| | | | | ||| ||| ||||| ||||| || || || Sbjct 188183 A---TCTCAACAA-CCGCCCCAGCAA-GCAGGTTGTGCAGGACATCATCACTGAAGCTGT 188129 Query 58193 CGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAA 58252 ||| || || || || || | || || ||||| || || ||| | ||||| ||||| Sbjct 188128 CGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTC 188069 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG 58312 || | |||| |||| || ||||||||||| || ||||| || | | | |||| Sbjct 188068 CAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTGGTTG---CGCTTGG 188012 Query 58313 --AGAGC--GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368 | ||| || | |||||| | | || || || || || ||| | ||||| || | Sbjct 188011 CAACAGCAAGT-ACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGG 187953 Query 58369 AGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || || || ||||| ||||| || ||| |||| || || || Sbjct 187952 CTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAGAA 187907 >seq89 Length=200026 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGA-AACGGTCAAA 31273 |||| ||||| || ||||| | || ||||| | ||||||| |||| |||| | | | Sbjct 23871 TGACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTTAAGA 23812 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || ||| | | ||||||||||| | || ||||| ||||||||| | || || |||||| Sbjct 23811 CAAAGATTCAAG-ACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGC 23753 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| |||| ||| | || | ||| || || || || || ||||| ||||| Sbjct 23752 AAGCAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCTACTCTC 23693 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||| || | ||| | ||||||| Sbjct 23692 CACTTGGTTCTCCGTCTGCGTGGCGGTA 23665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| |||| ||||| | ||||| | ||| Sbjct 23590 TCGTCAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCG 23531 Query 31263 AAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| ||| ||| | ||| ||||| || | || || |||||||||||| | Sbjct 23530 ACAATGTCAAGACAAAGA-TCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTG 23472 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| | || ||| || || ||| || |||||||| || Sbjct 23471 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAG 23412 Query 31382 GAATCGACTCTTCATCTGGT 31401 || || || || ||||| || Sbjct 23411 GAGTCCACCCTCCATCTCGT 23392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| |||| || ||| | ||| Sbjct 23144 ATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTCC 23085 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || || ||| ||| | |||||||||||| | || || || || Sbjct 23084 GATACTATTGATAACGTGAAGACAAAGA-TCCAGGACAAGGAAGGAATTCCTCCAGATCA 23026 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || ||| | || || | ||| || || || || Sbjct 23025 GCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAA 22966 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| || ||||| || || ||| Sbjct 22965 CATCCAGAAAGAGAGCACCCTTCACCTCGTCCTT 22932 >seq91 Length=644249 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| || || || || ||| ||||||| || || ||||| || Sbjct 240079 TTCGTGAAGACCCTGACGGGTAAGACTATTACCCTCGACGTCGAGTCGAGCGACACCATC 240138 Query 31262 GAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || | ||||| ||| ||| | ||||||||| ||| | || || |||||||||||||| Sbjct 240139 GACAACGTCAAGACAAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCT 240197 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || || ||||| || ||| | || || ||| ||||||| || ||||| || || Sbjct 240198 TATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTGAGCGACTACAACATCCAGAA 240257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764800813040