Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq117 149 1e-30 >seq117 Length=965375 Score = 149 bits (164), Expect = 1e-30 Identities = 303/445 (68%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| ||||| || || |||||||| |||||||| ||| | || |||||||| |||| Sbjct 188345 TTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCT 188286 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | || | |||||||||| || | |||||| ||| | |||||| | | Sbjct 188285 GGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCTCGCG 188226 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA--- 102092 | ||||||||||| ||||| || ||| || |||| | | | | | Sbjct 188225 ATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTT------CTCTCATCTCAACAACC 188172 Query 102093 -CCCCATCAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 ||||| |||| || | | | || || |||||||||| ||| |||||| | || Sbjct 188171 GCCCCAGCAAGCAGGTTG--TGCAGGACATCATCACTGAAGCTGTCGCAATTGAGAAGGA 188114 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 ||| || || | | |||| || ||| | | || ||||| | ||| | ||| |||| Sbjct 188113 ATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCCAATCTTATGTGCCA 188054 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTG-AAATGGGACTAGAAAAGCACTATA 102269 ||| || || ||||| || |||| ||| |||||| ||| | || ||| |||| | Sbjct 188053 GTATATCGAGTTTGTTGCTGATAGACTCCTGGTTGCGCTTGGCAACAG-CAAGTACTACA 187995 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | |||||||| ||| ||||||||||| || ||||| | ||| |||||||| | Sbjct 187994 ACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTAAAACCAACTTCT 187935 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCA 102354 | || ||| | || | ||| || || Sbjct 187934 TCGAGAAGCGCGTTGGCGACTACCA 187910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580361114085