Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq117 111 1e-19 >seq117 Length=965375 Score = 111 bits (122), Expect = 1e-19 Identities = 276/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | ||||| || |||||||||||| || | || ||||| || ||||| |||| Sbjct 188349 CGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATC 188290 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||| ||||||| ||| | ||||| || | | || ||||||||| ||||| Sbjct 188289 TTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCT 188230 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 || || |||||||| ||| ||||| ||||| || |||| || | ||| Sbjct 188229 CGCGATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTTCTCTCATCTCAACAACCGC 188170 Query 22921 CCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTC 22980 || | || | | || || | ||||| |||| || || | ||||||| || ||| Sbjct 188169 CCCAGCAAGCAGGTTGTGCAGGACATCATCACTGAAGCTGTCGCAATTGAGAAGGAATTC 188110 Query 22981 TTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTAC 23040 | || || || |||| || || |||||| | |||| | | ||| Sbjct 188109 CTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCCAATCTTATGTGCCAGTAT 188050 Query 23041 ATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTT 23100 || |||||||||| ||| | || || | ||| || || | ||| || ||| Sbjct 188049 ATCGAGTTTGTTGCTGATAGACTCCTGGTTGCGCTTGGCAACAGCAAGTACTACAACTCC 187990 Query 23101 GCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 |||| ||||| || |||||||| ||||| | | | |||||||| |||||||| || Sbjct 187989 ACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTAAAACCAACTTCTTCGA 187931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232353961661