Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq219 187 4e-42 >seq219 Length=270999 Score = 187 bits (206), Expect = 4e-42 Identities = 565/857 (66%), Gaps = 28/857 (3%) Strand=Plus/Minus Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||| || || | | ||| || || |||||||| ||||| || |||||||||| || || Sbjct 154127 CCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAA 154068 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACG 80035 | || || | | ||| |||||| ||||| || ||||| ||||| | ||| Sbjct 154067 A-AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTTTTTGCGGAGATCCAAGAATT 154012 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | || ||||| ||||| ||||||| ||| || || | | | ||||| || ||||||| Sbjct 154011 CGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTC 153952 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | |||||||| | |||||| || || || || | || | | ||| || | || |||| Sbjct 153951 CACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCAT 153892 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214 | || | || ||||| |||| || || || ||||||| || | | | | Sbjct 153891 TAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTG 153833 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| || || ||||| | || || || | ||||| || || ||||||||||| Sbjct 153832 AGACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATA 153773 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT- 80333 || || |||||||| | |||| | | || ||||| | || | ||| | || Sbjct 153772 CCTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCA---GCTGA-GCCTG 153717 Query 80334 ---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 ||| || ||||| || | || || || || || ||||| | || | ||||| | Sbjct 153716 GGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAA 153657 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGC 80448 || || |||||||| || ||| |||| | ||| || ||||| || || || ||| Sbjct 153656 GTTATATGTCTCAATGGCCCTTTCAATAT--CGTTGCCGTGTATTCCAACAGCAACCCGC 153599 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | ||||||||| || | || | | ||| ||| || | || ||| || Sbjct 153598 ATCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGC 153539 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 || | ||| || ||||| || | ||||| ||| || || ||||| | || | ||| Sbjct 153538 TCAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAG 153479 Query 80569 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGA 80627 || || | ||| || ||| |||||| | ||| | ||| ||||| ||||| | Sbjct 153478 TTAAGCTCATCGGCATGTTTCATAACTA-TTTCATATGTCTCCTTAGAAATCATCGGTGC 153420 Query 80628 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAAT 80685 |||| ||| || || || ||||||| |||| | || || ||| | || Sbjct 153419 TGGTTTATTATTCTTTGGGTTGACATAGT--AATAGAGGTCTGAGATGACTAGAGAGAAC 153362 Query 80686 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAA 80745 | || || |||| |||||| || || ||||| ||||| | || || | ||| |||||| Sbjct 153361 TGCTTCTTGGTTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAA 153302 Query 80746 TCTGGATGTTGTGTAGT 80762 ||||| ||| |||||| Sbjct 153301 TCTGGGTGTGTTGTAGT 153285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266223210680