Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq219 201 2e-46 >seq219 Length=270999 Score = 201 bits (222), Expect = 2e-46 Identities = 580/877 (66%), Gaps = 28/877 (3%) Strand=Plus/Minus Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 |||||||| || | | || ||| || || | | | | || || |||||||| ||||| Sbjct 154147 TCATTCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCT 154088 Query 72043 GGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 || |||||||||| || ||| || || | | ||| |||||| ||||| || || Sbjct 154087 GGGGTCCAAAGAGCGTAGAAA-AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTT 154032 Query 72102 TTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 ||| ||||| | ||| | | || ||||| ||||| ||||||| ||| || || | Sbjct 154031 TTTGCGGAGATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAA 153972 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 | | |||||||| |||||||| |||||||| | |||||| || || || || | || | Sbjct 153971 AGCACCCGGCCGCTTGTTTCCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACG 153912 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 | ||| || | || ||||| || | || ||||| |||| || || || |||| Sbjct 153911 GAGCATAGGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGC 153852 Query 72279 ACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 ||| || | | | | | ||||| || || ||||| | || || || | ||||| Sbjct 153851 ACGGAT-TCGGTGGACGTTGAGACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGG 153793 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 || || ||||||||||| || || || ||||| | |||| | | || ||||| Sbjct 153792 TCTTCAAGGTATCATAGATACCTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATG 153733 Query 72398 TAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 | || | ||| | || ||| || ||||| || | || || || || || ||| Sbjct 153732 AGGCCA---GCTGA-GCCTGGGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTA 153677 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--AT 72511 || | || | ||||| | || || |||||||| || ||| |||| | ||| | Sbjct 153676 AAGTACTTCTGAGACATCAAGTTATATGTCTCAATGGCCCTTTCAATAT--CGTTGCCGT 153619 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 ||||||| || || || ||||| | ||| ||||| || | || | | ||| ||| | Sbjct 153618 GTATTCCAACAGCAACCCGCATCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGA 153559 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 | | || ||| || || | ||| || ||||| || | ||||| ||| || | Sbjct 153558 TCCGTAGCAGGTATGAACGCTCAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGC 153499 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 72691 | ||||| | || | || || || | ||| || ||| ||||||| | ||| Sbjct 153498 GATCGTACACGATTGCGGAGTTAAGCTCATCGGCATGTTTCATAACTAT-TTCATATGTC 153440 Query 72692 TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--T 72748 | ||| ||||| ||||| | |||| ||| || || || ||||||| |||| | | Sbjct 153439 TCCTTAGAAATCATCGGTGCTGGTTTATTATTCTTTGGGTTGACATAGT--AATAGAGGT 153382 Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808 | || ||| | || | || || |||| |||||| || || ||||| ||||| | Sbjct 153381 CTGAGATGACTAGAGAGAACTGCTTCTTGGTTTGCTTGTGAAGGTTGGATACAGCTATCC 153322 Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGT 72845 || || ||||| ||||||||||| ||| |||||| Sbjct 153321 GAGCAGCAAGAATAGCATAATCTGGGTGTGTTGTAGT 153285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136792288120