Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq117 127 3e-24 seq219 98.7 1e-15 >seq117 Length=965375 Score = 127 bits (140), Expect = 3e-24 Identities = 329/496 (66%), Gaps = 23/496 (5%) Strand=Plus/Minus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || |||||||| |||| ||||| |||||| | ||| |||| | | ||| | | Sbjct 188406 AAGAAGGCTCATTGGGCCATTCGCTGGATCCAGGACCGTGAGTCCACCTTCGCTCAGCGT 188347 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || |||||||| || || ||||||||||| || || ||||| ||||||| Sbjct 188346 CTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTC 188287 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || | ||||| || || || | |||||| | || ||||| Sbjct 188286 TGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCTCGC 188227 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCG 125604 || || || || ||| ||||| || || |||| || || || | | | ||| Sbjct 188226 GATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTTCTCTCATCTCAACAACCGCCCC 188167 Query 125605 AGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || | ||| | || ||| ||||| | || || || || || || Sbjct 188166 AG----CAAGCAG-GTTGTGCAGGACATCA------TCACTGAAGCTGTCGCAATTGAGA 188118 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | || || ||||| || |||| || || | | | |||||||| | ||| || |||| Sbjct 188117 AGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCCAATCTTATGT 188058 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGG---CCGCAA 125779 || |||| || |||||||| || ||| | || ||| ||| | |||| | |||| Sbjct 188057 GCCAGTATATCGAGTTTGTTGCTGATAGACTCCTG-----GTTGCGCTTGGCAACAGCAA 188003 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | |||||| ||| || || || || |||||| || ||| || || | ||||| || Sbjct 188002 GTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTAAAAC 187943 Query 125840 CAACTTTTTCGAGAAG 125855 |||||| ||||||||| Sbjct 187942 CAACTTCTTCGAGAAG 187927 >seq219 Length=270999 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| || || || ||||| || ||| | || ||||| ||||||||| Sbjct 153934 GATACGTGGATCAGGGTGGAAACAAGCGGCCGGGTGCTTTTGCTATCTACCTGGAACCTT 153993 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || ||||| || || | || | ||||||||| ||| || |||| Sbjct 153994 GGCACGCTGATGTTTTCGAATTCTTGGATCTCCGCAAAAACCATGGAAAGGAGGAGGTCA 154053 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 |||| | ||| | || || || || ||| |||||| |||| |||||||| || | | Sbjct 154054 GAGCTCGTGACCTTTTCTACGCTCTTTGGACCCCAGATCTGTTTATGAAGCGGGTTGAGG 154113 Query 97045 ---ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 |||||| |||||| || | ||||| | | |||| || ||| | ||| || Sbjct 154114 CTAACGGTG---ACTGGACACTTTTCTGCCCGAATGAGGCACCTGGCCTGGCTGATGTCT 154170 Query 97102 GGGGCGAAGAGTTTGAGGC 97120 || || |||||||| || Sbjct 154171 ATGGTGACGAGTTTGACGC 154189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056541450120