Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq89 98.7 8e-16 >seq89 Length=200026 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| |||||||| || || |||||||| |||| || || | ||||| |||||| Sbjct 22942 TGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGC 23001 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC---ATAATT 48640 || || || |||| | |||||||||||| || | | |||||||||| || || Sbjct 23002 TTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTT 23061 Query 48641 TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| | | || | || ||||||| ||| || ||||| ||| ||||| || || Sbjct 23062 GTCTTCACGTTA---TCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCC 23118 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| || |||||||| Sbjct 23119 GTAAGGGTCTTCACGAAGATCTGCAT 23144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || | ||| || ||| |||||| ||||||||||| || | || || ||||| Sbjct 23389 AAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 23448 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||||||||| || | || ||||||||||| ||| || | || ||||| ||| Sbjct 23449 TCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATCC 23508 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || || ||| ||||||| ||||| || || || Sbjct 23509 TGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGATAGTC 23568 Query 48695 TTACCGGTGAGAGTTTTCAC 48714 || || ||||| || || || Sbjct 23569 TTGCCAGTGAGGGTCTTGAC 23588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249726542287