Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq89 107 2e-18 >seq89 Length=200026 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||||||||| | || || || || || | |||||| ||||| ||||| Sbjct 23176 GTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCATCCTCAAGCTGCTTTCCA 23235 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||| || || ||||| || || || || | ||| |||| ||| Sbjct 23236 GCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTATCTTGAATCTTTGTCTTA 23295 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | ||||| || | ||||| || ||||| ||||| || Sbjct 23296 ACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATAGTCTTTCCCGTAAGGGTC 23355 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 23356 TTCACAAAGATCTGCAT 23372 Score = 102 bits (112), Expect = 7e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | |||||||||||| || | || || ||| | || || || |||| Sbjct 23685 ACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGG--AGAGGGTACGACCGTCCT 23742 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || ||||||| || | |||||||| |||||||| ||||| ||||| | Sbjct 23743 CCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTT 23802 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| |||| ||| ||| | ||| ||||| | | || || || | |||||||| | Sbjct 23803 GAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCT 23862 Query 94977 TTCCAGT 94983 | ||||| Sbjct 23863 TGCCAGT 23869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| | || || | | ||||||||||||||||| ||||| || Sbjct 22989 ATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTT 23048 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||| ||| ||| | | ||| || | || || || | ||||| Sbjct 23049 GTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGAT 23108 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| ||||| || ||||| ||||||||||| Sbjct 23109 GGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCAT 23144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289591755320