Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq253 199 6e-47 seq262 179 6e-41 >seq253 Length=366180 Score = 199 bits (220), Expect = 6e-47 Identities = 206/267 (77%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | || || |||||||| || ||||||||||| || || Sbjct 3094 GCCAAGCGTCACCGTAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 3036 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||||||| |||| | || |||| || |||| Sbjct 3035 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAGGAGAC 2976 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||| |||||| || ||||||||| |||||| || || ||||| Sbjct 2975 CCGTGGTGTCCTGAAATCCTTCCTTGAGTCCGTTATCCGTGATGCCGTCACGTACACCGA 2916 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||||||||| || | ||| |||||||||| |||| || || || Sbjct 2915 GCACGCTAAGCGCAAGACTGTCACTTCGCTTGATGTCGTCTATGCCCTGAAGCGCCAGGG 2856 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| |||||||||| || |||| Sbjct 2855 ACGTACCCTTTATGGTTTCGGTGGTTA 2829 >seq262 Length=184599 Score = 179 bits (198), Expect = 6e-41 Identities = 189/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| |||| Sbjct 181236 CGCCAAGCGTCACCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 181178 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| || || |||||||| || |||||| |||| | || |||| || |||| Sbjct 181177 TTCGTCGTCTTGCACGCCGTGGTGGTGTTAAGCGTATCTCCGCCATGATCTACGAGGAGA 181118 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | |||| ||||||| || || |||| ||||||| || ||| || | Sbjct 181117 CCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCTGTCACCTACACTG 181058 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||||| || ||||| || || || | ||| | |||||||| | || ||||||| Sbjct 181057 AGCACGCTAAGCGGAAGACCGTTACTTCTCTCGATGTTGTCTATGCTCTTAAGCGTCAAG 180998 Query 16671 GCCGTA 16676 | |||| Sbjct 180997 GACGTA 180992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074937593891