Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq219 176 6e-39 >seq219 Length=270999 Score = 176 bits (194), Expect = 6e-39 Identities = 598/916 (65%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || |||||||| || | |||| ||| ||||| |||| ||| || | | | | Sbjct 154186 TCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTC 154127 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63256 || || |||| | ||| || || |||||||| ||||| || |||||||||| || ||| Sbjct 154126 CAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAA 154067 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGC 63313 || || | | ||| ||||| ||||| || ||||| ||||| | ||| | Sbjct 154066 -AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTTTTTGCGGAGATCCAAGAATTC 154011 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | || ||||| ||||| ||||||| ||| || || | | | || ||||| |||||||| Sbjct 154010 GAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCC 153951 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 |||||||| | |||||| || || || || | || | | ||| || | || || || Sbjct 153950 ACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATT 153891 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-A 63492 || || ||||| |||| || || || ||||||| || | | | | | Sbjct 153890 AGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTGA 153832 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| || || ||||| | || || || | ||||| || || || |||||||||| Sbjct 153831 GACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATAC 153772 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 63610 | || |||||||| | |||| | | || ||||| | || | ||| | || Sbjct 153771 CTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCA---GCTGA-GCCTGG 153716 Query 63611 --AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63668 ||| || ||||| || | || || || || || ||||| | || | ||| | | Sbjct 153715 GGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAG 153656 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCA 63726 || || |||||||| || || |||| | ||| || ||||| || || || |||| Sbjct 153655 TTATATGTCTCAATGGCCCTTTCAATAT--CGTTGCCGTGTATTCCAACAGCAACCCGCA 153598 Query 63727 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63786 | | ||||||||| || | || | | ||| || || | || ||| || | Sbjct 153597 TCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGCT 153538 Query 63787 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 | | ||| || ||||| || | ||||| ||| || || ||||| | || | |||| Sbjct 153537 CAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAGT 153478 Query 63847 TGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAA 63905 | || | ||| || ||| ||||||| | ||| | ||| ||||| ||||| | Sbjct 153477 TAAGCTCATCGGCATGTTTCATAACTAT-TTCATATGTCTCCTTAGAAATCATCGGTGCT 153419 Query 63906 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATA 63963 |||| ||| || || || ||||||| |||| | || || ||| | || Sbjct 153418 GGTTTATTATTCTTTGGGTTGACATAGT--AATAGAGGTCTGAGATGACTAGAGAGAACT 153361 Query 63964 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 64023 | || || |||| |||||| || || ||||| ||||| | || || ||||| ||||||| Sbjct 153360 GCTTCTTGGTTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAAT 153301 Query 64024 CCGGATGTTGTGTAGT 64039 | || ||| |||||| Sbjct 153300 CTGGGTGTGTTGTAGT 153285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944965176920