Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq219 219 1e-51 seq117 84.2 6e-11 >seq219 Length=270999 Score = 219 bits (242), Expect = 1e-51 Identities = 470/692 (68%), Gaps = 14/692 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| | ||| || ||||| || |||||||| | | | || Sbjct 153519 TTCGGTTTCAAGACTCTTGAGCGTTCATACCTGCTACGGATCAATGGGAAGGTGGCAGAG 153578 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | ||||| |||||| |||| || || || ||| |||| Sbjct 153579 CGTCCCCAGCACATGCTGATGCGGGTTGCTGTTGGAATACACGGCAACGATATTGAAAGG 153638 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGT--GTA-TTCACGCACGCCACGCCAACA 363567 || ||||| |||||||| ||| | || ||| ||| || || || ||| |||| || Sbjct 153639 GCCATTGAGACATATAA-CTTG-ATGT-CTCAGAAGTACTTTACCCATGCCTCGCCGACT 153695 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||||| || |||| | | ||| || | || || || || | | |||| Sbjct 153696 CTGTTCAATGCCGGCACTCCCCAGGCTCAGCTGGCCTCATGTTTCCTGGTCGATATGAGA 153755 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | ||| |||||| ||||||| ||| || | |||| || || | |||||||||| | Sbjct 153756 GCAGATAGCATCGAAGGTATCTATGATACCTTGAAGACCTGCGCGATGATTTCCAAGACT 153815 Query 363688 GCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 |||||||| |||||| | | || ||||| | ||||| | | ||||||| ||| Sbjct 153816 GCAGGCGGTATTGGTCTCAACG-TCCACCGAATCCGTGCCACGGGCTCTTACATTGCCGG 153874 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || | || ||||| | || || ||||| ||||| || ||||||||||||| Sbjct 153875 AACCAACGGCTCTTCTAATGGAATCGTCCCTATGCTCCGTGTATTCAACAATACTGCGAG 153934 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||| || ||||||||| ||||| || || |||||||| || || || ||| Sbjct 153935 ATACGTGGATCAGGGTGGAAACAAGCGGCCGGGTGCTTTTGCTATCTACCTGGAACCTTG 153994 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || ||| |||| || || | || ||||| |||||| ||||| ||||| | | Sbjct 153995 GCACGCTGATGTTTTCGAATTCTTGGATCTCCGCAAAAACCATGGAAAGGAGGAGGTCAG 154054 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || ||||| || ||||| || |||||| | || | ||||||||||| || ||||| Sbjct 154055 AGCTCGTGACCTTTTCTACGCTCTTTGGACCCCAGATCTGTTTATGAAGCGGGTTGAGGC 154114 Query 363987 AGGTAA---GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 ||| | ||| |||| || ||||| | || || || || | ||||| | Sbjct 154115 ---TAACGGTGACTGGACACTTTTCTGCCCGAATGAGGCACCTGGCCTGGCTGATGTCTA 154171 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 |||||||| | || ||||| |||||||||| Sbjct 154172 TGGTGACGAGTTTGACGCTCTCTACGAAAAGT 154203 Score = 125 bits (138), Expect = 2e-23 Identities = 680/1081 (63%), Gaps = 26/1081 (2%) Strand=Plus/Plus Query 364074 GTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCAT 364133 ||||||| ||| |||| || ||||| ||| | || |||||||| |||| ||| || Sbjct 154257 GTATGAACAGGAAGGAAGGGGTCGTAGGACCGTCAAGGCCCAGAAGCTTTGGTATGCTAT 154316 Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193 | || |||||| ||||| |||| |||| ||||||||| || || | |||||| | Sbjct 154317 TCTCGAGGCGCAGACAGAGACTGGAAACCCCTTTATGTTGTATAAGGACGCTTGCAACAG 154376 Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTA 364252 ||| ||||||| || |||| || || || | | || | ||||| || || |||||| Sbjct 154377 AAAGAGCAACCAGAAGAACCTCGGAACTATCC-GTAGCTCCAACCTCTGCACTGAGATTG 154435 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 | || |||| |||||| ||||| ||| || |||||| | || || | || ||||| Sbjct 154436 TCGAGTACAGCGCTCCGGACGAAGTTGCAGTTTGTAACTTGGCATCTCTTGCCCTTCCTA 154495 Query 364313 CGTTTGTAAAAGATGGTACTTTTGACCACCAGCAT------CTTTATGACGTAACCTATC 364366 ||||||| | || | ||| || | | || |||| || | | Sbjct 154496 CGTTTGTTGATTCTGTCCGTGGTGAATACGATTTTGGAAAGCTGCATGAAGT----TGTG 154551 Query 364367 ATGCTACTTGC----AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422 | | |||| || || ||||| |||| |||| || || ||||| |||| ||| Sbjct 154552 CAGGTTCTTGTCCGGAACCTGAACAAGATTATTGACATTAACTACTATCCTGTTCCCGAA 154611 Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||| || ||| | || ||||| || |||| ||||||||| | || || || ||| Sbjct 154612 GCCAAGAAGAGCAATCTTCGCCATCGTCCCATTGCTCTTGGTGTCAATGGTCTTGCCGAC 154671 Query 364483 GTTTTTATGATGC--TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 | || | ||| | || ||||||| ||| | || || | || || | Sbjct 154672 GCCTTCCT--TGCCTTGCGCCTGCCATTTGACTCGGCCGAAGCGAGACAGCTGAACATTC 154729 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCA 364600 |||| || ||||| || || | || ||||||| || || |||| || Sbjct 154730 AGATTTTCGAAACCATCTACCACGGTGCCTTGACTGCGTCTGCGGAACTGGCCAAGGAGT 154789 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 || | ||| || ||||| || || || | || || || | |||| | || Sbjct 154790 TTGGGACGTATGAGACATATGAAGGCTCTCCCGTCTCCCAAGGTATCCTCCAATACGACA 154849 Query 364661 TATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGA 364720 | ||| | | || | | || ||| | |||||| |||| |||| || Sbjct 154850 TGTGGGACAGGAAACCCACCGACCTCTGGGATTGGGATTCGCTCAAGGCCAAGATTGCAG 154909 Query 364721 AGCATGGTACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCAC 364777 |||| || |||||| | || || || || ||||| ||||| || | Sbjct 154910 AGCACGGCGTGCGCAACAGTTTGCTGGTG---GCCCCTATGCCGACGGCAAGCACCAGCC 154966 Query 364778 AGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGG 364837 |||| || || ||| ||||||||||| |||| || || |||| || ||||| | Sbjct 154967 AGATTCTTGGCTTCAATGAGTGCTTCGAGCCGTACACTTCGAACATTTACTCTCGCCGAG 155026 Query 364838 TTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCG 364897 | ||| | |||||||| | || || || | || | ||||| ||| |||| | Sbjct 155027 TCCTTGCTGGAGAATTCCAAGTTGTCAACCCATGGCTTCTTAAGGACCTTGTCGACTTGG 155086 Query 364898 GGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACA 364957 | || ||| ||||| |||||||||| || || || | ||||||||| ||||||| Sbjct 155087 GTCTCTGGTCTGACAACATGAAGAACCGCATTATTGCGGAGGGTGGTTCTGTTCAGAACA 155146 Query 364958 TTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC 365017 |||| |||| | || | ||| | | ||||| || || ||||| || || || Sbjct 155147 TTCCCAATATTCCCGCAGCCATCAAGGCCCTCTACAAGACTGTCTGGGAGATCTCTCAGC 155206 Query 365018 GAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | | || | | ||||| || || || ||||| | || ||| |||||| | | Sbjct 155207 GTAACATCCTGCAGATGGCTGCAGACCGTGGTGCATACATTGACCAGTCTCAGTCGCTCA 155266 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 | | ||||| |||| ||| | |||| |||| |||||| || ||||||| Sbjct 155267 ATATCCACATGAAGGAGCCTACCATGGGCAAGATTACCAGCATGCACTTTGCTGGGTGGA 155326 Query 365138 A 365138 | Sbjct 155327 A 155327 >seq117 Length=965375 Score = 84.2 bits (92), Expect = 6e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 ||||| | |||||| | || || || | ||||||||||| ||||| |||||| | ||| Sbjct 188358 TTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTT 188299 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 | ||||| ||| | || || |||| | ||||| ||||| || || || || ||| Sbjct 188298 GCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAG 188239 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | ||| || ||||| |||||||| || || || || || Sbjct 188238 CTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTG 188198 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 131389 GTTCTTATTATCGATGAAGTTTCTATGCTTGATGGAGAATTATTTAATAAACTTGAAAAA 131448 ||||||||||||||||| ||||| ||| | || ||||| | ||| | ||||||||| | Sbjct 343191 GTTCTTATTATCGATGAGGTTTCGATGGTAGACGGAGATCTTTTTGACAAACTTGAAGAG 343250 Query 131449 ATCGCACAGAGTATTCGATCAAATTCTAGACCATTTGGTGGAATTCAACTAATTCTCGTT 131508 || |||| | | ||| | ||| | | |||||||| |||||||| || | | Sbjct 343251 ATTGCACGGCGGATTAGGAACAATGGTCGGCCATTTGGAGGAATTCAGCTCGTGATTACC 343310 Query 131509 GGAGACTTTTATCAGCTACCACCTGT 131534 || ||||| | ||||||||| || || Sbjct 343311 GGTGACTTCTTTCAGCTACCTCCAGT 343336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348807324434