Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq117 149 6e-31 seq89 125 7e-24 seq91 111 1e-19 seq238 107 2e-18 >seq117 Length=965375 Score = 149 bits (164), Expect = 6e-31 Identities = 313/460 (68%), Gaps = 19/460 (4%) Strand=Plus/Minus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || ||||| ||||| | || ||||| || ||| || ||| |||| || ||||| Sbjct 188361 ACCTTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCC 188302 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 ||||| ||||||| | | || | ||| | ||||| || || || || |||| Sbjct 188301 TTTGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAAC 188242 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323 |||||||| || ||||| || || || || |||||||| || || || | | || Sbjct 188241 GAGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTT-----CT 188187 Query 46324 CGCGTGCACGACAAGCTTGCGCCCGACACC-----GTGCTGAGCATGTTCAAGGAGGCGG 46378 | | | | | |||| | || || | | | |||| | ||| ||| || || | Sbjct 188186 CTCAT-CTCAACAACC--GCCCCAGCAAGCAGGTTGTGCAGGACATCATCACTGAAGCTG 188130 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438 | || ||||||||||| || | |||| || || || | |||||| || |||||||| Sbjct 188129 TCGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATT 188070 Query 46439 CACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTT--C 46495 | || || |||||| | || ||||||||||| || || |||| || || |||| | Sbjct 188069 C-CAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTGGTTGCGCTTGGC 188011 Query 46496 ACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555 | |||| ||| | | || | ||| ||||| || || ||| ||||||||||||||| Sbjct 188010 AACAGC--AAGTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGG 187953 Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || ||||| || || ||||| |||||||| ||||| || Sbjct 187952 CTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTA 187913 >seq89 Length=200026 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| |||||||| ||||||||||| ||| | Sbjct 23374 CCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 23433 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| ||||||||||||||||| || Sbjct 23434 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGA 23493 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | ||| ||| | ||||| | Sbjct 23494 ATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACC 23553 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | || || || || || || || |||| Sbjct 23554 TCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 23590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | || || ||||| || || ||||| ||| Sbjct 23667 CCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAG 23726 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| ||||||||||| || ||||| Sbjct 23727 AGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 23786 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 23787 ATGCCTTCCTTGTC 23800 >seq91 Length=644249 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||||| || || ||||| |||||||| || || ||| Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||||||| ||||| || || ||||| ||| || ||||| | | Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGT 240140 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || ||| | ||||||| ||||| ||||| || ||||| || || || || |||| Sbjct 240139 CGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGA 240080 Query 131225 A 131225 | Sbjct 240079 A 240079 >seq238 Length=427615 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||||| || |||||||| ||| Sbjct 50104 CCACCACGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 50045 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| |||||| Sbjct 50044 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 49985 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 49984 ATGCCCTCCTTGTC 49971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011106654080