Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq219 172 7e-38 >seq219 Length=270999 Score = 172 bits (190), Expect = 7e-38 Identities = 597/916 (65%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || |||||||| || | |||| |||| ||||| |||| ||| || | | | | Sbjct 154186 TCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTC 154127 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111 || || |||| | ||| || || |||||||| ||||| || |||||||||| || ||| Sbjct 154126 CAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAA 154067 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGC 63168 || || | | ||| ||||| ||||| || ||||| ||||| | ||| | Sbjct 154066 -AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTTTTTGCGGAGATCCAAGAATTC 154011 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | || ||||| ||||| ||||||| ||| || || | | | || ||||| |||||||| Sbjct 154010 GAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCC 153951 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 |||||||| | |||||| || || || || | || | | ||| || | || ||||| Sbjct 153950 ACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATT 153891 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-A 63347 || | || ||||| || | || || || ||||||| || | | | | | Sbjct 153890 AGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTGA 153832 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 |||| || || ||||| | || || || | ||||| || || ||||||||||| | Sbjct 153831 GACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATAC 153772 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 63465 | || || ||||| | |||| | | || ||||| | || | ||| | || Sbjct 153771 CTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCA---GCTGA-GCCTGG 153716 Query 63466 --AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 ||| || ||||| || | || || || || || ||||| | || | ||| | | Sbjct 153715 GGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAG 153656 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCA 63581 || || |||||||| || || |||| | ||| || ||||| || || || |||| Sbjct 153655 TTATATGTCTCAATGGCCCTTTCAATAT--CGTTGCCGTGTATTCCAACAGCAACCCGCA 153598 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 | | ||||||||| || | || | | ||| || || | || ||| || | Sbjct 153597 TCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGCT 153538 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 | | ||| || ||||| || | ||||| ||| || || ||||| | || | |||| Sbjct 153537 CAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAGT 153478 Query 63702 TGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAA 63760 | || | ||| || ||| |||||| | ||| | ||| ||||| || || Sbjct 153477 TAAGCTCATCGGCATGTTTCATAACTA-TTTCATATGTCTCCTTAGAAATCATCGGTGCT 153419 Query 63761 TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATA 63818 |||| ||| || || |||||||||| |||| | || || ||| | || Sbjct 153418 GGTTTATTATTCTTTGGGTTGACATAGT--AATAGAGGTCTGAGATGACTAGAGAGAACT 153361 Query 63819 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAAT 63878 | || || |||| ||||| || || ||||| ||||| | ||| || ||||| ||||||| Sbjct 153360 GCTTCTTGGTTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAAT 153301 Query 63879 CCGGATGTTGTGTAGT 63894 | || ||| |||||| Sbjct 153300 CTGGGTGTGTTGTAGT 153285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629726845200