Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq89 111 1e-19 >seq89 Length=200026 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || || |||| ||| | ||| | | || | Sbjct 23869 ACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTTAAGACA 23810 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || ||||| |||||||| || ||| | || ||||| ||||| Sbjct 23809 AAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAAG 23750 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| ||||||| ||||| || || || ||||| || | || Sbjct 23749 CAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCTACTCTCCAC 23690 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || |||| || ||| Sbjct 23689 TTGGTTCTCCGTCTGCGTGGCGGT 23666 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | | ||| || | ||| || |||| | Sbjct 23576 ACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCGACAATGTCAAGACA 23517 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||||||||| || || || || ||| | || || || || || Sbjct 23516 AAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGATCTTCGCTGGTAAG 23457 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | ||||| ||||||||||| || || |||||| | ||| Sbjct 23456 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTCCAT 23397 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||||| | || || ||| Sbjct 23396 CTCGTCTTGCGTCTTCGTGGTGGT 23373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726531870155