Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq117 93.3 9e-14 seq6 89.7 1e-12 seq4 84.2 4e-11 >seq117 Length=965375 Score = 93.3 bits (102), Expect = 9e-14 Identities = 261/391 (67%), Gaps = 16/391 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | || || |||| ||||| |||||||||||||| ||||| ||| Sbjct 187931 TCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTCCATGAAGTCGAATGGGTTGGTG 187990 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | |||| | |||||| || || | || | || || |||||||| | | Sbjct 187991 GAGTTGTAGTACTTGCTGTTGCCAAGCGCAACCAGGAGTCTATCAGCAACAAACTCGATA 188050 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAA--GGAATTGCCTCACAGA 251740 ||||| | ||| || | || |||||||| | | | ||| || | || || | Sbjct 188051 TACTGGCACATAAGATTGGAATTCATGCCGA--GAAGGGCAACTGGGAGGGCATCCGTTA 188108 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC---ACCTG-TGCCAGA 251796 ||||||||| || | || || || || | || ||| | ||||| | | | Sbjct 188109 GGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGATGTCCTGCACAACCTGCTTGCTGG 188168 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCT 251854 | | | ||||| || | ||| ||| | || || || | || ||| ||||| | Sbjct 188169 GGC-GGTTGTT---GAGATGAGAGAACAACAGGCAAGCGAAGTCCGT--GTGAAGACCTT 188222 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | |||||| || | ||||||||| | | || |||||||||| ||||| ||| | | Sbjct 188223 CATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCAGGCATCAAGCCACGCTTCTTCA 188282 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||||||| | ||||||||||||||| Sbjct 188283 ACCAGAAGATGGATGCAAAGGATCCAGAGAA 188313 >seq6 Length=280615 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGC-AGC 280762 ||||||||||| |||||||| ||||| || ||| ||||| | ||| | | || || Sbjct 237130 CACTCTCGCATGCGCGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCTTGC 237071 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 237070 TC-GTGGCAGCGTCCTCACGTCATCGTTCTTGATGAGCCTACTAACTACCTTGACCGTGA 237012 Query 280823 GAGCCTGGGCGCTCTG 280838 || || |||||| Sbjct 237011 CTCTCTCGGTGCTCTG 236996 >seq4 Length=852194 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||||||||| || |||||||| | |||||| |||| || || |||||| | || | | Sbjct 354848 CAATGGTGCCGGAAAGTCTACTTTCATCAAACTCCTTACCGGTGAGACC-ATTCCTCAAA 354906 Query 280244 GGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 ||| | ||| ||||||||||||| | || || | ||| || ||||| || || Sbjct 354907 CTGGTAAGGTTGAGAAGCATCCCAACCTTCGTATTGGGTACATCAAGCAGCATGCGCTCG 354966 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 | ||| | |||| || |||| | |||||| | ||| || | |||||||| ||||| Sbjct 354967 AGCACGTGGAGATGCATTTGGAGAAGACTCCCAGCCAGTATCTCCAGTGGCGGTATGC 355024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833020451367