Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq89 109 5e-19 >seq89 Length=200026 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| || || | |||||||| || || || ||||| ||| Sbjct 23664 ATACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCG 23723 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || || || || ||||| |||| | |||||| || || ||| Sbjct 23724 GAGAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGA 23783 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| |||| ||||| ||| | | || | |||||||| ||| || Sbjct 23784 GGAATGCCTTCCTTGTCTTGAATC-TTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTC 23842 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || |||| || | || ||||| |||| Sbjct 23843 AACCTCCAGAGTGATGGTCTTGCCAGTCA 23871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 ||||| || |||||||| || || ||||||| ||| ||||| || || || ||| | Sbjct 22954 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAA 23013 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| || || |||||||| ||||| ||||| |||||| || | | Sbjct 23014 ATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTA 23073 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| || |||| ||||| || || | || | || || || || || || || || Sbjct 23074 TCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACG 23133 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 23134 AAGATCTGCAT 23144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | || || || || ||||||||||| ||| Sbjct 23371 ATACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 23430 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || ||||| || ||||||||| |||| | |||||| |||||||| Sbjct 23431 GACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGG 23490 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | || | |||||| | || || Sbjct 23491 GGAATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCA 23550 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || ||||| || || || || || Sbjct 23551 ACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132930448644