Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq117 215 1e-50 seq219 141 2e-28 >seq117 Length=965375 Score = 215 bits (238), Expect = 1e-50 Identities = 362/518 (70%), Gaps = 13/518 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 |||||||||| ||||||||| | ||||| | ||||||| || | || | || Sbjct 188418 CCCTGCATCACGAAGAAGGCTCATTGGGCCATTCGCTGGATCCAGGACCGTGAGTCCACC 188359 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| || | || || ||||| |||| || || |||||||||||||| || |||| Sbjct 188358 TTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTT 188299 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || |||||||||||| | ||| || | | |||||| || || || ||||| ||||| Sbjct 188298 GCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAG 188239 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || | || || || || || | |||||| || ||||| ||||||| || Sbjct 188238 CTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTTCTC---TCAT 188182 Query 42873 CTCAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 |||| |||| |||| | ||| || || | || ||||||||| || || || | Sbjct 188181 CTCA---ACAACCGCCCCAGCAAGCAGGTTGTGCAGGACATCATCACTGAAGCTGTCGCA 188125 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 || |||||||| ||||| ||| | | || || || |||| |||||||||| | | Sbjct 188124 ATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCCAAT 188065 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCA 43047 || |||||| |||| ||| ||| || || || |||||| ||| | | || || Sbjct 188064 CTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTGGTTGC--GCTTGGCAACA 188007 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 || ||||||| | | ||| |||||||| ||||| |||||||| ||| || | Sbjct 188006 GCAAGTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTA 187947 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||| |||||||||||||| | |||||||||| Sbjct 187946 AAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAG 187909 >seq219 Length=270999 Score = 141 bits (156), Expect = 2e-28 Identities = 319/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 244969 CGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 |||||| | || |||| || ||| ||| |||| || ||| || || || ||| | Sbjct 154142 CGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGT 154083 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||| || || | ||| ||||| | | ||||| ||| ||| ||| ||| || | Sbjct 154082 CCAAAGAGCGTAGAAAAGGTCACGAG--CTCTGACCTCCTCCTTTCCATGGTTTTTGCGG 154025 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || ||||| || || || || || ||||||| || |||| ||||| ||| | || || Sbjct 154024 AGATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCC 153965 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 ||||||||||| || ||||| ||||| ||| | |||||| | || || || Sbjct 153964 GGCCGCTTGTTTCCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATA 153905 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA-- 245264 || || || || ||||| ||||||||| || ||||| | |||| || | | || Sbjct 153904 GGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATT 153845 Query 245265 -GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTG 245323 ||| | | || | || | ||||| || |||||| || | |||||| |||| Sbjct 153844 CGGTGGACGTTG---AGACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTC 153788 Query 245324 ATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGAC 245383 | ||| || || || || ||||| || | |||| | || ||| || || |||| | Sbjct 153787 AAGGTATCATAGATACCTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCC 153728 Query 245384 AGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| | || ||| ||| | ||||||||||| || ||| ||||||||||| Sbjct 153727 AGCTGAGCCTGGGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTA 153672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335812183120